View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-2 (Length: 570)
Name: NF4414-Insertion-2
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 43 - 416
Target Start/End: Complemental strand, 37305891 - 37305522
Alignment:
| Q |
43 |
cattgttcgcttctttttactgcagcatattttcaaaacttcatatctagtgatgttgtgatttaattacgtgatgcagtagtttctgagnnnnnnncct |
142 |
Q |
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| T |
37305891 |
catttttcgcttttttttactgcagcatattttcaaaacttcatatctagtgatgttgtgattta-----gtgatgcagtagtttctgagtttttttcct |
37305797 |
T |
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| Q |
143 |
actatgtattactttaaagaaaatgctgattattcgatgatgcaatttgcaatagttagatggaaagtgctatggacattcagaaaatagttttgagttt |
242 |
Q |
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| T |
37305796 |
actatgtattactttaaagaaaatgctgattatgcgatgatgcaatttgcaatagttagatggaaagtgttatggacattcagaaaataattttgagttt |
37305697 |
T |
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| Q |
243 |
tatgggnnnnnnnnaacagcaaaaagaaatttcttgaaagatgtcttttaat----acttatgttgtttgatttcaactccatcagtttttgtcaaaaac |
338 |
Q |
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| T |
37305696 |
tgtgggttttttttaacagcaaaaagaaatttcttgaaagatgtcttttaatttcaact--cctagtttgatttcaactccatcagtttttgtcaaaaac |
37305599 |
T |
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| Q |
339 |
aaaccccatcagttaaatttcatgtatattttccttaattatcaaatatattatctatttcctcttaaacaaaatata |
416 |
Q |
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| T |
37305598 |
aaaccccatcagttaaatttcatgtata-tttccttacttatcaaatatattatctatttcctcttaaacaaaatata |
37305522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 6776024 - 6776101
Alignment:
| Q |
417 |
gagtttaattgcaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
495 |
Q |
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| T |
6776024 |
gagtttaattgtagtgcactgacagtgtaaagat-agtttacacagtcatccaataacaatctgccacatcatcttctc |
6776101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 6776352 - 6776275
Alignment:
| Q |
417 |
gagtttaattgcaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
495 |
Q |
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| T |
6776352 |
gagtttaattgtagtgcactgacagtgtaaagat-agtttacacagtcatccaataacaatctgccacatcatcttctc |
6776275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 495
Target Start/End: Complemental strand, 818599 - 818514
Alignment:
| Q |
409 |
aaaatatagagtttaattgcaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
495 |
Q |
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| T |
818599 |
aaaataaagagtttaattgtagtgcattgacagtgtaaagat-agtttacacagtcatccaataacaatttgccacatcatcttctc |
818514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 495
Target Start/End: Original strand, 817912 - 817991
Alignment:
| Q |
415 |
tagagtttaattgcaatgcactcacagtgtaaaaaacagtttacacaatcatccaataacaacctgccacatcattttctc |
495 |
Q |
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| T |
817912 |
tagagtttaattgtagttcactgacagtgtaaagat-agattacacagtcatccaataacaatctgccacatcatcttctc |
817991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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