View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-3 (Length: 536)
Name: NF4414-Insertion-3
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 1435171 - 1434870
Alignment:
| Q |
7 |
atatatatagtctcaattatttatctttttgtaatggtctgaataatgaattgtagagcaaaatatggtgtttcattggaaagaggtccatttgacaaga |
106 |
Q |
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| T |
1435171 |
atatatatagtctcaattatttatctttttgtaatggtctgaataatgaattgcagagcaaaatatggtgtttcattggaaagaggtccatttgacaaga |
1435072 |
T |
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| Q |
107 |
gaactgcagattttgtttggatgttgatatttggcgcactctcacttttggtacgtgtgaacaaatacaatttatttaactcnnnnnnnaggcagattag |
206 |
Q |
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| T |
1435071 |
gaactgcagattttgtttggatgttgatatttggcgcactctcacttttggtacgtgcgaacaaatacaatttattcaactctttttttaagcagattag |
1434972 |
T |
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| Q |
207 |
tggttaaaagttcacctcttacgatgaataagtaggtgtttcagattcaaacctcgacccatgtatatgttatgtaatgtatataccaattgagttaagc |
306 |
Q |
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| T |
1434971 |
tggttaaaagttcacctcttaggatgaataaataggtgtttgagattcaaacctcgacccatgtatatgttatgtaatgtttataccaattgagttaagc |
1434872 |
T |
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| Q |
307 |
ta |
308 |
Q |
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|| |
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| T |
1434871 |
ta |
1434870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 308 - 536
Target Start/End: Complemental strand, 1434828 - 1434600
Alignment:
| Q |
308 |
atgaaaatgacttttctattgctccgtctatttgttccgttaatttagtttcatccttttcttaggtgatggctgttgtgccatatttatggtctctatt |
407 |
Q |
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| T |
1434828 |
atgaaaatgacttttctattgctccctctttttgttccgttaatttagtttcatccttttcttaggtgatggctgttgtgccatatttatggtctccatt |
1434729 |
T |
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| Q |
408 |
catgggaatttctttagttttcatgattgtctatgtttggagccgtgaatttccagatgcaagaatcaacatttatggtttggtatcattgaaggtaaga |
507 |
Q |
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| T |
1434728 |
catgggaatttctttagttttcatgattgtctatgtttggagccgtgaatttccagatgcaagaatcaacatttatggtttggtatcattgaaggtaaga |
1434629 |
T |
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| Q |
508 |
tgaatttccaatgactcttttgttttgag |
536 |
Q |
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| T |
1434628 |
tgaatttccaatgactcttttgttttgag |
1434600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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