View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-5 (Length: 373)
Name: NF4414-Insertion-5
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 373
Target Start/End: Complemental strand, 42928783 - 42928418
Alignment:
| Q |
8 |
gtaattaattaaaaaattagctatatattttgactgaacattcatgtattacaaatttgtccttaacagatatgaactgtgatgtatatttatcttatta |
107 |
Q |
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| T |
42928783 |
gtaattaattaaaaaattagctatatattttaactgaacattcatgtattacaaatttgtccttaacagatatgaactgtgatgtatatttatcttatta |
42928684 |
T |
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| Q |
108 |
tattcaagcatatataatacaggtcgttaannnnnnnnatgatatacagtctgttcattagctccaaaacattgagtnnnnnnnnttagctacaaaactt |
207 |
Q |
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| T |
42928683 |
tattcaagcatatataatacaggtcgttaattttttttatgacatacagtctgttcattagctccaaaacattgagtaagaaaaattagctacaaaactt |
42928584 |
T |
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| Q |
208 |
tctgtaaaaaattggacatcatagctataattagaactacaatttcatttctatacattaacgatgtaccaattatagaactaggtaattttgatgttct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |
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| T |
42928583 |
tctgtaaaaaattggacatcatagctataattagaactacaatttcatttctatacattaacaatgtacccattatagaaccaggtaattttgatgttct |
42928484 |
T |
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| Q |
308 |
aatacaatagtagaaaatctcaaaatggcagtgcaaggtagaaaatgacttgcctgtcttcttagc |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928483 |
aatacaatagtagaaaatctcaaaatggcagtgcaaggtagaaaatgacttgcctgtcttcttagc |
42928418 |
T |
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