View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-6 (Length: 359)
Name: NF4414-Insertion-6
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 3828611 - 3828963
Alignment:
| Q |
8 |
tctccaaaatgagacaactttcttgttgtgataaagcaaaaagacccagaaaggtgaggttttgaatgggctctccgtaccacaaatcattccaaaatca |
107 |
Q |
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| T |
3828611 |
tctccaaaatgagacaactttcttgttgtgataaagcaaaaagacacagaaaggtgaggttttgaatgggctctccgtaccacaaatcattccaaaatca |
3828710 |
T |
|
| Q |
108 |
ggtccctgtaccacaaccatattttttactaaccacgccacggaaccaatccaacctcctaccgggcaccacacttaaaccgcatacatccttccaccat |
207 |
Q |
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| T |
3828711 |
ggtccctgtaccacaaccatattttttactaaccacgccacggaaccaatccaacctcctaccgggcaccacacttaaaccgcatacatccttccaccat |
3828810 |
T |
|
| Q |
208 |
aaagaaactacgttcggtctattaaaatttgataaatctgtg----ttagtaactatccctttttcataccttgccatcaacacccttttccataacaaa |
303 |
Q |
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|||||||| || |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3828811 |
aaagaaaccacattcggtctattaaaatttgataaatccgtgttaattagtaactatctctttttcataccttgccatcaacacccttttccataacaaa |
3828910 |
T |
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| Q |
304 |
tccccccactaataacctccactgagttttaaacccttcactcctagcccacc |
356 |
Q |
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| T |
3828911 |
tccccccactaataacctccactgagttttaaacccttcactcctagcccacc |
3828963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 3867746 - 3868017
Alignment:
| Q |
87 |
ccacaaatcattccaaaatcaggtccctgtaccacaacca-tattttttactaaccacgccacggaaccaatccaacctcctaccgggcaccacacttaa |
185 |
Q |
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||||||||||||| ||||| ||||||| ||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||| ||||| ||| ||| |
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| T |
3867746 |
ccacaaatcattc-aaaattgggtccctataccacaaccaattttttttactaaccacaccacagaaccaatccaacctcctaccgagcacctcacctaa |
3867844 |
T |
|
| Q |
186 |
accgcatacatccttccaccataaagaaactacgttcggtctattaaaatttgataaatctgtgttagtaactatccctttttcataccttgccatcaac |
285 |
Q |
| |
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|||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||| |||| | ||||||||||||||||||||| |
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| T |
3867845 |
accgcataaatccttccaccataaagaagctacattcggtctattaaaagttgataaatccgtgttagtaattatctcattttcataccttgccatcaac |
3867944 |
T |
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| Q |
286 |
acccttttccataacaaatccccccactaataacctccactgagttttaaacccttcactcctagcccaccata |
359 |
Q |
| |
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| T |
3867945 |
acccttttccataacaaat-cccccagtaataacctccactgtgttttatacccttcactcctagcccatcata |
3868017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 326
Target Start/End: Original strand, 3861749 - 3861956
Alignment:
| Q |
118 |
ccacaaccatattttttactaaccacgccacggaaccaatccaacctcctaccgggcaccacacttaaaccgcatacatccttccaccataaagaaacta |
217 |
Q |
| |
|
||||||||| ||||||||||||||| | || |||||||| ||||||||| |||||| ||| || ||||| | ||||| |||||||||||||||| | |
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| T |
3861749 |
ccacaaccaatttttttactaaccacact-cgaaaccaatctgacctcctactaggcacctcacctagaccgcgtgcatccctccaccataaagaaacca |
3861847 |
T |
|
| Q |
218 |
cgttcggtc-tattaaaatttgataaatctgtgttagtaactatccctttttcataccttgccatcaacacccttttccataacaaatcccc--ccacta |
314 |
Q |
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| T |
3861848 |
cattcggtcttattaaaa---gataaatctcggttggtaactatctcaattccacacctgtccataaacaccgttttccataacaagtccccatccacta |
3861944 |
T |
|
| Q |
315 |
ataacctccact |
326 |
Q |
| |
|
|||||||||||| |
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| T |
3861945 |
ataacctccact |
3861956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 3825006 - 3825073
Alignment:
| Q |
7 |
atctccaaaatgagacaactttcttgttgtgataaagcaaaaagacccagaaaggtgaggttttgaat |
74 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3825006 |
atctccaaaatgaggcaactttcttgttgtgataaagaaaaaagacgtggaaaggtgaggttttgaat |
3825073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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