View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-8 (Length: 266)
Name: NF4414-Insertion-8
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 11943885 - 11944127
Alignment:
| Q |
8 |
caaagctagcaaccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11943885 |
caaagctagcaaccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttg |
11943984 |
T |
|
| Q |
108 |
taatctttcagaaactctctaagcacttcaccaagtttttcatttgtaacgttattgatgtcatcaaatactcctcttgcccactcatttggcataaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11943985 |
taatctttcagaaactctctaagcacttcaccaagtttttcatttgtaacgttattgatgtcatcaaatactcctcttgcccactcatttggcataaact |
11944084 |
T |
|
| Q |
208 |
gaaaggataaaagaagaaaataataaaaccctaggtagcactg |
250 |
Q |
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| T |
11944085 |
gaaaggataaaagaagaaaataataaaaccctaggtagcactg |
11944127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 11927938 - 11927698
Alignment:
| Q |
8 |
caaagctagcaaccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11927938 |
caaagctagcaaccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttg |
11927839 |
T |
|
| Q |
108 |
taatctttcagaaactctctaagcacttcaccaagtttttcatttgtaacgttattgatgtcatcaaatactcctcttgcccactcatttggcataaact |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11927838 |
taatctttcagaaactctctaagcacttcaccaagtttttcatttgtaacgtttttgatgtcatcaaatactcctcttacccactcatttggcataaact |
11927739 |
T |
|
| Q |
208 |
gaaaggataaaagaagaaaataataaaaccctaggtagcac |
248 |
Q |
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|
| T |
11927738 |
gaaaggataaaagaagaaaataataaaaccctaggtagcac |
11927698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 28889295 - 28889117
Alignment:
| Q |
20 |
ccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttgtaatctttcaga |
119 |
Q |
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||||||||||| ||||||||||||||||| |||||| ||| ||||| |||| |||||||||| ||| | || | || ||||||||||||||||||| | |
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| T |
28889295 |
ccttgtgtaagcatttaaagctgcttttgacattgtataagcagaagcaaaagttggccaatctttgatctctagtgatccttctttgtaatctttctca |
28889196 |
T |
|
| Q |
120 |
aactctctaagcacttcaccaagtttttcatttgtaacgttattgatgtcatcaaatactcctcttgcccactcatttg |
198 |
Q |
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|||||| | ||||| ||| | | |||||| ||||| | ||| | ||||||| ||| ||| ||| ||||||||||||| |
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| T |
28889195 |
aactcttttagcacctcatctattttttcctttgttaggttttcaatgtcattaaacactattctagcccactcatttg |
28889117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 36017470 - 36017336
Alignment:
| Q |
20 |
ccttgtgtaagaatttaaagctgcttttgccattgtgtaaccagaaacaaacgttggccaattttttgtttccaatgctccttctttgtaatctttcaga |
119 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||| ||| ||||| |||| |||||||||| ||| | || | || |||||||||||||| |||| | |
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| T |
36017470 |
ccttgtgtaagcatttaaagctgcttttgacattgtataagcagaagcaaaagttggccaatctttgatctctagtgatccttctttgtaatttttctca |
36017371 |
T |
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| Q |
120 |
aactctctaagcacttcaccaagtttttcatttgt |
154 |
Q |
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|||||| | ||||| ||| | | |||||| ||||| |
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| T |
36017370 |
aactcttttagcacctcatctattttttcctttgt |
36017336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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