View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414-Insertion-9 (Length: 256)
Name: NF4414-Insertion-9
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414-Insertion-9 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 69235 - 69014
Alignment:
| Q |
34 |
taataaaaatggtaaattgcactagtaacataccaaaatcacataaattgagagccacaatgatacacttaaccataaataaatgaaaaacataaaaaac |
133 |
Q |
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| T |
69235 |
taataaaaatggtaaattgtactagtaacatactaaaatcacatatattaagagccacaatgatacacttaaccataaataaatgaaaaacataaaaaac |
69136 |
T |
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| Q |
134 |
tgaaccatacctgcaataaggtgtaacagccttggagacttcactgagcacaacggcatcaacaaccttttcttcattcttccttatatctggatttata |
233 |
Q |
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| T |
69135 |
tgaaccatacctgcaataaggtgtaacagccttggagacttcactgagcacaacggcatcaacaaccttatcttcattcttccttatatctggatttata |
69036 |
T |
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| Q |
234 |
ctactcacaccccctgtctctg |
255 |
Q |
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| T |
69035 |
ctactcacaccccctgtctctg |
69014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 69442 - 69412
Alignment:
| Q |
12 |
aagatttcaaaattttaaccaataataaaaa |
42 |
Q |
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| T |
69442 |
aagatttcaaaattttaaccaataataaaaa |
69412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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