View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_high_10 (Length: 334)
Name: NF4414_high_10
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 25216553 - 25216245
Alignment:
| Q |
19 |
ctttgagctcttcaaatgttaagtgtccatttttgtctttgtccatcatatcaaacattttcctaaacccgtcgatttgttcatctggcaagttatcagc |
118 |
Q |
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| T |
25216553 |
ctttgagctcttcaaatgttaagtgtccatttttgtctttgtccatcatatcaaacattttcctaaacccgtcgatttgttcatctggcaagttatcagc |
25216454 |
T |
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| Q |
119 |
caccacctaaagagagaaccaaattaattcagaagtgtaaaaacataccaatccctgacttgcatatgaaaactgattcgatgaaacttactctaaggac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216453 |
caccacctaaagagagaaccaaattaattcagaagtgtaaaaacataccaatccctgacttgcatatgaaaactgattcgatgaaacttactctaaggac |
25216354 |
T |
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| Q |
219 |
tttctttttgaatctgttcatcaaggagaattgtttgatcctcgacctcacttggtctccaagagaaacatttttaccatgctccctattttgtatccaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216353 |
tttctttttgaatctgttcatcaaggagaattgtttgatcctcgacctcacttggtctccaagagaaacatttttaccatgctccctattttgtatccaa |
25216254 |
T |
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| Q |
319 |
gaataatct |
327 |
Q |
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|||| |||| |
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| T |
25216253 |
gaatgatct |
25216245 |
T |
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