View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_high_17 (Length: 238)
Name: NF4414_high_17
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3014534 - 3014754
Alignment:
| Q |
1 |
tgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctaca |
100 |
Q |
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| T |
3014534 |
tgtttttgtatttcatatttcagcggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctaca |
3014633 |
T |
|
| Q |
101 |
atcatgaatatgtgcaggttagccttttttccactagttattattatagttcaatgtttctttgtcacagatctcataacatatcttgttattgcagagt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
3014634 |
atcatgaatatgtgcaggttagccttttttcaactagttattattatagttcaatgtttcttcgtcgcagatctcataacatatcttgttattgcagagt |
3014733 |
T |
|
| Q |
201 |
cttcgacctagtcgtttatct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3014734 |
cttcgacctagtcgtttatct |
3014754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 183046 - 183119
Alignment:
| Q |
1 |
tgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
74 |
Q |
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|||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
183046 |
tgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 591325 - 591250
Alignment:
| Q |
8 |
gtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
83 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
591325 |
gtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
9 |
tatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
108 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| |||| ||| |||||||||| ||| || |
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| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
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| Q |
109 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
156 |
Q |
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|||||||||||||| ||||| | | | |||||||||| ||||||| |
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| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44606407 - 44606488
Alignment:
| Q |
1 |
tgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
82 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||| |
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| T |
44606407 |
tgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44627898 - 44627979
Alignment:
| Q |
1 |
tgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
82 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||| ||||||| |
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| T |
44627898 |
tgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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