View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_high_3 (Length: 509)
Name: NF4414_high_3
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 27080918 - 27080572
Alignment:
| Q |
19 |
tgatggaccatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgcc |
118 |
Q |
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| T |
27080918 |
tgatggaccatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgcc |
27080819 |
T |
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| Q |
119 |
aattttgatgtagaagataatttatgcctttgatcaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtc |
218 |
Q |
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|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27080818 |
aattttgatgta-aagattttttatgcctttgattaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtc |
27080720 |
T |
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| Q |
219 |
ggtgaaacaaatgacttcatggtggtgcatatgtctagacaataagagtccttgataaatgacataaaactcaacatgaagaattttagaagattctaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27080719 |
tgtgaaacaaatgacttcatggtggtgcatatgtctagacaataagagtccctgataaatgacataaagctcaacatgaagaattttagaagattctaaa |
27080620 |
T |
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| Q |
319 |
aggagtcatgagaaacgtgagatccaaatcctgaattttaatattctg |
366 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27080619 |
aggaatcatgagaaacgtgagatccaaatcctgaattttaatattctg |
27080572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 27148739 - 27149085
Alignment:
| Q |
19 |
tgatggaccatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagagagtgtgggtgatgcagacatgcc |
118 |
Q |
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| T |
27148739 |
tgatggaccatgagaccaatattggaagaagcgcatagcttagcaagaaaatgattacaattattttcttctcagacagtgtgggtgatgcagacatgcc |
27148838 |
T |
|
| Q |
119 |
aattttgatgtagaagataatttatgcctttgatcaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtc |
218 |
Q |
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|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27148839 |
aattttgatgta-aagattttttatgcctttgattaatgtagcaaatttgtgaaattttggagtttgatcttgaagaagaacaatgaaatgtaaagagtc |
27148937 |
T |
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| Q |
219 |
ggtgaaacaaatgacttcatggtggtgcatatgtctagacaataagagtccttgataaatgacataaaactcaacatgaagaattttagaagattctaaa |
318 |
Q |
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| T |
27148938 |
tgtgaaacaaatgacttcatggtggtgcatatgtctagacaataagagtccctgataaatgacataaagctcaacatgaagaattttagaagattctaaa |
27149037 |
T |
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| Q |
319 |
aggagtcatgagaaacgtgagatccaaatcctgaattttaatattctg |
366 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27149038 |
aggaatcatgagaaacgtgagatccaaatcctgaattttaatattctg |
27149085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 429 - 500
Target Start/End: Complemental strand, 27080506 - 27080435
Alignment:
| Q |
429 |
agatggagactaacatgtccatctttcttttaatgataaaaatattagttgaaaaatattacctgatgatgt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27080506 |
agatggagactaacatgtccatctttcttttaatgataaaaatattagttgaaaaatattacctgattatgt |
27080435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 462
Target Start/End: Original strand, 27149151 - 27149184
Alignment:
| Q |
429 |
agatggagactaacatgtccatctttcttttaat |
462 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27149151 |
agatggagactaacatgtccatctttcttttaat |
27149184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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