View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4414_high_6 (Length: 367)

Name: NF4414_high_6
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4414_high_6
NF4414_high_6
[»] chr1 (18 HSPs)
chr1 (1-343)||(3762115-3762454)
chr1 (8-63)||(46281444-46281499)
chr1 (8-63)||(36669379-36669433)
chr1 (10-63)||(7371959-7372011)
chr1 (7-63)||(33173698-33173754)
chr1 (7-43)||(50824769-50824805)
chr1 (8-63)||(1689399-1689454)
chr1 (8-43)||(8846001-8846036)
chr1 (8-63)||(14247672-14247726)
chr1 (12-63)||(26585186-26585236)
chr1 (8-63)||(45042269-45042323)
chr1 (8-63)||(45350104-45350158)
chr1 (8-63)||(49020412-49020467)
chr1 (8-50)||(50932326-50932368)
chr1 (7-64)||(42299194-42299250)
chr1 (7-75)||(43755686-43755754)
chr1 (22-63)||(45863743-45863784)
chr1 (8-56)||(37515931-37515978)
[»] chr7 (16 HSPs)
chr7 (8-63)||(24532951-24533006)
chr7 (18-63)||(40528489-40528533)
chr7 (11-47)||(8904418-8904454)
chr7 (7-63)||(15564919-15564975)
chr7 (8-63)||(10014964-10015018)
chr7 (8-63)||(18157194-18157248)
chr7 (8-63)||(35857505-35857559)
chr7 (8-63)||(43079641-43079695)
chr7 (8-63)||(46829487-46829542)
chr7 (8-41)||(18111620-18111653)
chr7 (8-63)||(29723935-29723991)
chr7 (7-63)||(30864425-30864480)
chr7 (8-44)||(35452581-35452617)
chr7 (7-43)||(38939987-38940023)
chr7 (7-63)||(42598215-42598271)
chr7 (7-63)||(46880910-46880966)
[»] chr6 (9 HSPs)
chr6 (7-63)||(1434672-1434727)
chr6 (8-72)||(11742991-11743055)
chr6 (8-63)||(3660362-3660416)
chr6 (7-63)||(3401092-3401147)
chr6 (12-55)||(17182115-17182158)
chr6 (8-63)||(34570603-34570658)
chr6 (7-64)||(29197731-29197787)
chr6 (7-43)||(23628388-23628424)
chr6 (7-63)||(31869075-31869130)
[»] chr5 (16 HSPs)
chr5 (8-63)||(40829422-40829477)
chr5 (6-43)||(19981992-19982029)
chr5 (8-63)||(3263517-3263571)
chr5 (8-63)||(4719658-4719713)
chr5 (8-63)||(6940158-6940213)
chr5 (8-63)||(11464131-11464185)
chr5 (8-63)||(32510841-32510896)
chr5 (8-43)||(32912066-32912101)
chr5 (8-63)||(38010880-38010934)
chr5 (7-41)||(7076576-7076610)
chr5 (8-41)||(34379483-34379516)
chr5 (7-63)||(1671550-1671605)
chr5 (7-63)||(3109594-3109650)
chr5 (7-63)||(8097257-8097313)
chr5 (8-64)||(9596823-9596878)
chr5 (10-62)||(36321806-36321858)
[»] chr4 (14 HSPs)
chr4 (10-63)||(32303295-32303348)
chr4 (7-59)||(22027449-22027501)
chr4 (8-63)||(39449181-39449234)
chr4 (31-63)||(52487300-52487332)
chr4 (8-63)||(7037493-7037547)
chr4 (20-63)||(15847403-15847446)
chr4 (8-63)||(17805460-17805514)
chr4 (8-63)||(42815412-42815467)
chr4 (8-63)||(45548793-45548847)
chr4 (9-63)||(47288090-47288144)
chr4 (8-41)||(40348823-40348856)
chr4 (8-75)||(39158100-39158168)
chr4 (11-63)||(47105919-47105970)
chr4 (7-63)||(52430885-52430941)
[»] chr2 (25 HSPs)
chr2 (10-63)||(40358122-40358175)
chr2 (7-63)||(10288158-10288213)
chr2 (7-63)||(13553155-13553210)
chr2 (8-67)||(2842889-2842948)
chr2 (8-63)||(3091749-3091803)
chr2 (8-63)||(34139047-34139101)
chr2 (10-43)||(1416049-1416082)
chr2 (7-48)||(7648414-7648455)
chr2 (12-64)||(1907776-1907828)
chr2 (7-63)||(7502435-7502491)
chr2 (8-64)||(14255309-14255365)
chr2 (8-63)||(6884918-6884972)
chr2 (8-43)||(9634444-9634479)
chr2 (8-63)||(12600056-12600110)
chr2 (8-63)||(12784407-12784462)
chr2 (8-63)||(21738624-21738679)
chr2 (8-63)||(29893618-29893672)
chr2 (8-63)||(34144560-34144614)
chr2 (8-63)||(37077797-37077852)
chr2 (8-73)||(2220990-2221056)
chr2 (25-67)||(15273428-15273470)
chr2 (8-63)||(5167749-5167805)
chr2 (7-39)||(12498643-12498675)
chr2 (8-60)||(30487453-30487504)
chr2 (7-43)||(30546376-30546412)
[»] scaffold0174 (1 HSPs)
scaffold0174 (8-63)||(34802-34857)
[»] chr8 (16 HSPs)
chr8 (8-63)||(32725789-32725843)
chr8 (8-63)||(45405992-45406047)
chr8 (10-63)||(2621793-2621846)
chr8 (7-63)||(30927939-30927994)
chr8 (8-63)||(5600995-5601050)
chr8 (8-63)||(5639570-5639625)
chr8 (8-63)||(14228715-14228769)
chr8 (8-63)||(22960425-22960480)
chr8 (13-64)||(38779037-38779088)
chr8 (8-63)||(43186304-43186358)
chr8 (7-44)||(8645192-8645229)
chr8 (8-41)||(28756565-28756598)
chr8 (10-63)||(44711986-44712038)
chr8 (7-63)||(3650121-3650176)
chr8 (9-41)||(28756691-28756723)
chr8 (8-36)||(31249533-31249561)
[»] chr3 (17 HSPs)
chr3 (8-63)||(1295340-1295394)
chr3 (8-63)||(38944150-38944204)
chr3 (12-63)||(42672847-42672898)
chr3 (202-263)||(1648171-1648232)
chr3 (10-63)||(29800560-29800612)
chr3 (10-63)||(50559222-50559275)
chr3 (7-63)||(28920057-28920113)
chr3 (7-63)||(46344422-46344477)
chr3 (7-63)||(48789335-48789391)
chr3 (8-63)||(6178434-6178488)
chr3 (22-73)||(42699846-42699897)
chr3 (29-66)||(21660111-21660148)
chr3 (8-41)||(31157686-31157719)
chr3 (14-63)||(51137050-51137099)
chr3 (7-63)||(27168689-27168745)
chr3 (7-39)||(40367640-40367672)
chr3 (7-63)||(52963323-52963379)
[»] scaffold0018 (1 HSPs)
scaffold0018 (8-63)||(36010-36064)
[»] scaffold0011 (1 HSPs)
scaffold0011 (8-63)||(18603-18657)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-63)||(469646-469701)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 3762115 - 3762454
Alignment:
Q  1 tatagcatgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat-ttttctcttatagataaggacaaagtgagtttcttt 99  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  3762115 tatagcatgagtatgggagaaaaaattgacacaaaaataatcacaaattagttgtataaatatcttttctcttatagataaggacaaagtgactttcttt 3762214  T
Q  100 tagtggtgaaaaactattgtattatcctagataattatgatgaatgtgattgtcgacattagggcgtaaatttactagattagcatataaaagattatac 199  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3762215 tagtggtgaaaaactattgtattatcttagataattatgacgaatgtgattgtcgacattagggcgtaaatttactagattagcatataaaagattatag 3762314  T
Q  200 tttatgtcaacaaatcttaactcaattagcaataatgtcaaaattgttaggttggatgtcgtgactgatgttcaaaccccaattctttcacttatgcatg 299  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||        
T  3762315 tttatgtcaacaaatcttaactcaattagcaataatatcaaaattattaggtcggatgtcgtgactgaagttcaaaccccaattctttcacttatgt--- 3762411  T
Q  300 cgtgtgagagttttcaatatcttttatcatttcgttaatcaacc 343  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  3762412 -gtgtgagagttttcaatatcttttatcatttcgttaatcaacc 3762454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 46281499 - 46281444
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||    
T  46281499 tgagtatgagagagaaagttgtcacaaaaattattacaaaatagttgtacaaatat 46281444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 36669379 - 36669433
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||| |||| |||||||||||||||||||  ||||||||||||    
T  36669379 tgagtatgagagaaaaagttgt-acaaaaattatcacaaattgattgtacaaatat 36669433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 7371959 - 7372011
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||    
T  7371959 agtatgagagagaaaattgt-acaaaaattgtcataaattagttgtacaaatat 7372011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 33173698 - 33173754
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||| | |||||||||||||||||||||| | ||| || ||||||||||||    
T  33173698 atgagtatgaaaaaaaaaattgtcacaaaaattataaaaaaataattgtacaaatat 33173754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 50824805 - 50824769
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50824805 atgagtatgagagagaaaattgtcacaaaaattatca 50824769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 1689454 - 1689399
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||||||||||| | | ||| |||||||||||||||    
T  1689454 tgagtatgagagagaaagttgtcacaaaaattgttataaaatagttgtacaaatat 1689399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 8846036 - 8846001
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8846036 tgagtatgagagagaaaattgtcacaaaaattatca 8846001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 14247726 - 14247672
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||| ||||||||||||||| | |||||||||||||    
T  14247726 tgagtatgagagagaaagttgtca-aaaaattatcacaaagtcgttgtacaaatat 14247672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 26585186 - 26585236
Alignment:
Q  12 tatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||| |||||| |||||||||| |||||||||||||||    
T  26585186 tatgagagaaaaagttgt-acaaaagttatcacaaaatagttgtacaaatat 26585236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 45042323 - 45042269
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||    
T  45042323 tgagtatgagagaaaaaattgtca-aaaaattgttagaaaatagttgtacaaatat 45042269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45350104 - 45350158
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||| ||  ||||||||||||||| || ||||||||||||    
T  45350104 tgagtatgagagaaaaaattatct-aaaaattatcacaaaataattgtacaaatat 45350158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 49020412 - 49020467
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||||||||||||||| || | | ||| | |||||||||||||    
T  49020412 tgagtatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatat 49020467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 50932368 - 50932326
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaatta 50  Q
    ||||||||||||||||||||||||||||| |||| | ||||||    
T  50932368 tgagtatgagagaaaaaattgtcacaaaagttataaaaaatta 50932326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 42299194 - 42299250
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    |||| ||||||| |||||||||||  ||||||||||||||| | ||||||||||||||    
T  42299194 atgaatatgagaaaaaaaattgtct-aaaaattatcacaaaatggttgtacaaatatt 42299250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 43755686 - 43755754
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat-ttttctcttata 75  Q
    |||||||||| ||| |||||||||| ||||||||||| ||| | |||||||||||||  |||||||||||    
T  43755686 atgagtatgaaagagaaaattgtca-aaaaattatcataaaatggttgtacaaatatcatttctcttata 43755754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 45863743 - 45863784
Alignment:
Q  22 aaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||| ||| || ||||||||||||    
T  45863743 aaaattgtcacaaaaattatcaaaaaataattgtacaaatat 45863784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 37515978 - 37515931
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgta 56  Q
    ||||||||||||| |||||||||| ||||||||||| ||| ||||||||    
T  37515978 tgagtatgagagagaaaattgtca-aaaaattatcataaaatagttgta 37515931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 24532951 - 24533006
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  24532951 tgagtatgagagaaaaaattgtcacaaaaattatcagaaaatagttgttcaaatat 24533006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 40528533 - 40528489
Alignment:
Q  18 agaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||    
T  40528533 agaaaaaattatcacaaaaattatcacaaa-tagttgtacaaatat 40528489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 8904418 - 8904454
Alignment:
Q  11 gtatgagagaaaaaattgtcacaaaaattatcacaaa 47  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8904418 gtatgagagagaaaattgtcacaaaaattatcacaaa 8904454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 15564975 - 15564919
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||  ||| |||||||||||||| || |||| |||||||||||||||    
T  15564975 atgagtatgagagctaaagttgtcacaaaaattgtcgcaaaatagttgtacaaatat 15564919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 10014964 - 10015018
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||| ||||| |||| ||||||| ||| |||||||||||||||    
T  10014964 tgagtatgagagaaaaagttgtc-caaatattatcataaaatagttgtacaaatat 10015018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 18157194 - 18157248
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||  ||||||||||||||| | |||||||||||||    
T  18157194 tgagtatgagagagaaaattgtct-aaaaattatcacaaagtggttgtacaaatat 18157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 35857559 - 35857505
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| ||||||||||||| |||||| ||||||||||||    
T  35857559 tgagtatgagagataaagttgt-acaaaaattatcataaattaattgtacaaatat 35857505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 43079641 - 43079695
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| ||||| |||||||||||||||| | |||||||||||||    
T  43079641 tgagtatgagagagaaagttgtc-caaaaattatcacaaagtggttgtacaaatat 43079695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 46829542 - 46829487
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||||||||||| | ||||| | |||||||||||||    
T  46829542 tgagtatgagagagaaagttgtcacaaaaattgttacaaaatggttgtacaaatat 46829487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 18111620 - 18111653
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    ||||||||||||| ||||||||||||||||||||    
T  18111620 tgagtatgagagagaaaattgtcacaaaaattat 18111653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 29723935 - 29723991
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatc-acaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| ||||||||||||||||| | ||| ||||||| |||||||    
T  29723935 tgagtatgagagagaaagttgtcacaaaaattatcaaaaaaatagttgttcaaatat 29723991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 30864425 - 30864480
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||| |||||| || ||||||||| |||||||||||||    
T  30864425 atgagtatgagagagaaagttgt-acaaaagttgtcacaaattggttgtacaaatat 30864480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 35452581 - 35452617
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcac 44  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  35452581 tgagtatgagagagaaagttgtcacaaaaattatcac 35452617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 38939987 - 38940023
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    |||||||| |||||||||||||| |||||||||||||    
T  38939987 atgagtataagagaaaaaattgttacaaaaattatca 38940023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 42598215 - 42598271
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| || ||||||||||| | | ||| |||||||||||||||    
T  42598215 atgagtatgagagataaagttatcacaaaaattgttaaaaaatagttgtacaaatat 42598271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 46880966 - 46880910
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| |||||| || |||||||||||| ||| | ||||| |||||||    
T  46880966 atgagtatgagagagaaaattatcgcaaaaattatcaaaaaatggttgttcaaatat 46880910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 1434672 - 1434727
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  1434672 atgaatatgagagaaaaaattgtca-aaaaattatcacaaattaattgtacaaatat 1434727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11742991 - 11743055
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt-tttctctt 72  Q
    |||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||| ||||||||    
T  11742991 tgagtatgagagaaaaaattgtct-aaaaattatcaaaaaatagttgtacaaatattatttctctt 11743055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 3660362 - 3660416
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||| |||||| || ||||||||| |||||||||||||    
T  3660362 tgagtatgagagaaaaaattgt-acaaaagttgtcacaaattggttgtacaaatat 3660416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 3401147 - 3401092
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||| ||||||||| ||  |||||||||||||||| |||||||||||||||    
T  3401147 atgagtatgaaagaaaaaatcgtt-caaaaattatcacaaaatagttgtacaaatat 3401092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 17182158 - 17182115
Alignment:
Q  12 tatgagagaaaaaattgtcacaaaaattatcacaaattagttgt 55  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||    
T  17182158 tatgagagagaaaattgtcacaaaaattatcaaaaaatagttgt 17182115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 34570603 - 34570658
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| ||||||||||| |||| ||||| | |||||||||||||    
T  34570603 tgagtatgagagagaaagttgtcacaaaagttattacaaaatggttgtacaaatat 34570658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 29197787 - 29197731
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    |||| ||||||||| ||||||||| |||||||||||||||| |  |||||||||||||    
T  29197787 atgaatatgagagagaaaattgtc-caaaaattatcacaaaatgattgtacaaatatt 29197731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 23628424 - 23628388
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    |||||||||||| | ||||||||||||||||||||||    
T  23628424 atgagtatgagatagaaaattgtcacaaaaattatca 23628388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 31869130 - 31869075
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| ||||||||||| || | ||||| |||||||||||||||    
T  31869130 atgagtatgagagagaaagttgtcacaaaagttgt-acaaaatagttgtacaaatat 31869075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 40829477 - 40829422
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||    
T  40829477 tgagtatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatat 40829422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 19981992 - 19982029
Alignment:
Q  6 catgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19981992 catgagtatgagagaaaaaattgtcacaaaaattatca 19982029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 3263517 - 3263571
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||| |||||| || ||||||||| |||||||||||||    
T  3263517 tgagtatgagagaaaaaattgt-acaaaagttgtcacaaattggttgtacaaatat 3263571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 4719713 - 4719658
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||  ||||||||||| || ||| ||||| |||||||||||||    
T  4719713 tgagtatgagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaaatat 4719658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 6940158 - 6940213
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||||||||||||| | ||| | |||||||||||||    
T  6940158 tgagtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatat 6940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 11464131 - 11464185
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| | |||||||| |||||| |||||||||||| |||||||||||||    
T  11464131 tgagtatgagaaagaaaattgt-acaaaagttatcacaaattggttgtacaaatat 11464185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32510841 - 32510896
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||| || || |||||||||||||||||||||| ||||| |||||| ||||||    
T  32510841 tgagtataagtgagaaaattgtcacaaaaattatcataaattggttgtataaatat 32510896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 32912101 - 32912066
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32912101 tgagtatgagagagaaaattgtcacaaaaattatca 32912066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 38010934 - 38010880
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||| |||||| ||||||||||||  ||||||||||||    
T  38010934 tgagtatgagagagaaaattgt-acaaaagttatcacaaattgattgtacaaatat 38010880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 7076576 - 7076610
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    |||||||||||||| ||||||||||||||||||||    
T  7076576 atgagtatgagagagaaaattgtcacaaaaattat 7076610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 34379516 - 34379483
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    ||||||||||||| ||||||||||||||||||||    
T  34379516 tgagtatgagagagaaaattgtcacaaaaattat 34379483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 1671605 - 1671550
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||| ||| |||||||||||||||||||| | |||||| |||| |||||||    
T  1671605 atgagtatgacagagaaaattgtcacaaaaattataaaaaatta-ttgtccaaatat 1671550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 3109594 - 3109650
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||  ||||||||||| || |||||||||  ||||||||||||    
T  3109594 atgagtatgagagagaatgttgtcacaaaagttgtcacaaattgattgtacaaatat 3109650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 8097313 - 8097257
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| || ||| || |||||||| |||||| ||||| |||||||||||||    
T  8097313 atgagtatgagtgagaaagttatcacaaaagttatcaaaaattggttgtacaaatat 8097257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 9596823 - 9596878
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    ||||||||||||| ||| |||| |||||| || ||||||||| ||||||||||||||    
T  9596823 tgagtatgagagacaaagttgt-acaaaagttgtcacaaattggttgtacaaatatt 9596878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 36321806 - 36321858
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaata 62  Q
    ||||||||| | ||| |||||||||||||||| ||||| | ||||||||||||    
T  36321806 agtatgagaaagaaatttgtcacaaaaattatgacaaaatggttgtacaaata 36321858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 32303295 - 32303348
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  32303295 agtatgtgaggaaaaattgttacaaaaattatcacaaaatagttgtacaaatat 32303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 22027449 - 22027501
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaa 59  Q
    |||||||||||||| |||||||||||||||| ||||||||| || ||||||||    
T  22027449 atgagtatgagagagaaaattgtcacaaaaaatatcacaaaataattgtacaa 22027501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 39449234 - 39449181
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||||||||  ||||| |||||||||| |||||||| ||||||    
T  39449234 tgagtatgagagaaaaaattgt--caaaagttatcacaaaatagttgtataaatat 39449181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 52487300 - 52487332
Alignment:
Q  31 acaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||||||||||||    
T  52487300 acaaaaattatcacaaattagttgtacaaatat 52487332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 7037493 - 7037547
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||| |||||| || ||||||||| |||||||||||||    
T  7037493 tgagtatgagagagaaaattgt-acaaaagttgtcacaaattggttgtacaaatat 7037547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 15847403 - 15847446
Alignment:
Q  20 aaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||| |||||||||||||||||| |||| |||||||||||||||    
T  15847403 aaaagattgtcacaaaaattatctcaaaatagttgtacaaatat 15847446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 17805514 - 17805460
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||| ||||||||| | ||| |||||||||||||||    
T  17805514 tgagtatgagagagaaaattgtca-aaaaattattaaaaaatagttgtacaaatat 17805460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 42815467 - 42815412
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| ||||||||||| || | ||||| |||||||||||||||    
T  42815467 tgagtatgagagagaaagttgtcacaaaagttgttacaaaatagttgtacaaatat 42815412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45548793 - 45548847
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||| ||||||| |||||| ||||||||||||||| | |||||||||||||    
T  45548793 tgagtatgaaagaaaaagttgtca-aaaaattatcacaaaatggttgtacaaatat 45548847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 47288144 - 47288090
Alignment:
Q  9 gagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||| ||| |||||||||||||| | ||||| | |||||||||||||    
T  47288144 gagtatgagagagaaagttgtcacaaaaattgttacaaaatggttgtacaaatat 47288090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 40348856 - 40348823
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    ||||||||||||| ||||||||||||||||||||    
T  40348856 tgagtatgagagagaaaattgtcacaaaaattat 40348823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 39158168 - 39158100
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat-ttttctcttata 75  Q
    ||||||||||||| ||| |||||||||||||||||| ||| |  |||| |||||||  |||||||||||    
T  39158168 tgagtatgagagagaaagttgtcacaaaaattatcaaaaaatgattgttcaaatatcatttctcttata 39158100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 47105970 - 47105919
Alignment:
Q  11 gtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||| ||| |||| |||||| ||||||||||||| ||||||||||||    
T  47105970 gtatgagagagaaagttgt-acaaaagttatcacaaattaattgtacaaatat 47105919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 52430941 - 52430885
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||| |||||| |||||||||| |||| || ||| ||| |||||||||||||||    
T  52430941 atgagtacgagagagaaaattgtcataaaagttgtcataaaatagttgtacaaatat 52430885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 40358122 - 40358175
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||| ||||||    
T  40358122 agtatgagagaaaaaattgtcacaaaaattattaaaaaatagttgtagaaatat 40358175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 10288213 - 10288158
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||| |||||  ||||||||||||||| |||||||||||||||    
T  10288213 atgagtatgagagaaaaagttgtct-aaaaattatcacaaaatagttgtacaaatat 10288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 13553210 - 13553155
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||    
T  13553210 atgagtatgagagagaaaattgtc-caaaaattatcacaaagtggttgtacaaatat 13553155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 2842889 - 2842948
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatattttt 67  Q
    ||||||||||||| ||| ||||||| |||||||| ||||| | |||||||||||||||||    
T  2842889 tgagtatgagagagaaagttgtcaccaaaattattacaaaatggttgtacaaatattttt 2842948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 3091803 - 3091749
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||| |||| |||||||||| |||||||||||||||    
T  3091803 tgagtatgagagagaaaattgtca-aaaagttatcacaaaatagttgtacaaatat 3091749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 34139047 - 34139101
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  34139047 tgagtatgagagataaaattgtca-aaaaattatcacaaagtagatgtacaaatat 34139101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 1416049 - 1416082
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatca 43  Q
    ||||||||||||||||||||||||||||||||||    
T  1416049 agtatgagagaaaaaattgtcacaaaaattatca 1416082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7648455 - 7648414
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaat 48  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  7648455 atgagtatgagagaaaaagttgtcacaaaaattgtcacaaat 7648414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1907776 - 1907828
Alignment:
Q  12 tatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    ||||||||| ||| |||||||||||||||| | ||| ||||||||||||||||    
T  1907776 tatgagagataaagttgtcacaaaaattattaaaaaatagttgtacaaatatt 1907828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 7502435 - 7502491
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||||||||||||| ||| ||| | |||||||||||||    
T  7502435 atgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatggttgtacaaatat 7502491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 14255365 - 14255309
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    |||||||| |||| ||||||||||||||| || ||| ||| ||||||||||||||||    
T  14255365 tgagtatgtgagagaaaattgtcacaaaagttgtcataaaatagttgtacaaatatt 14255309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6884972 - 6884918
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| | |||| ||||||||||||||||||||||||||    
T  6884972 tgagtatgagagagaaagttgt-ataaaagttatcacaaattagttgtacaaatat 6884918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 9634444 - 9634479
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9634444 tgagtatgagagaaaaagttgtcacaaaaattatca 9634479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 12600110 - 12600056
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| ||||||||||| |||||||||| | |||||||||||||    
T  12600110 tgagtatgagagagaaagttgtcacaaaa-ttatcacaaagtggttgtacaaatat 12600056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 12784407 - 12784462
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||||||||||||| | ||| | |||||||||||||    
T  12784407 tgagtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatat 12784462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 21738624 - 21738679
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||| ||||||||||||| | ||| | |||||||||||||    
T  21738624 tgagtatgagagagaaaattatcacaaaaattattagaaaatggttgtacaaatat 21738679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 29893672 - 29893618
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||| ||||| ||| |||| |||||| ||||||||||||||||||||||||||    
T  29893672 tgagtataagagagaaagttgt-acaaaagttatcacaaattagttgtacaaatat 29893618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 34144560 - 34144614
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||    
T  34144560 tgagtatgagagagaaagttgt-acaaaaattgtcacaaattggttgtacaaatat 34144614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 37077852 - 37077797
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||| ||| |||||||| ||||||||||||| ||| ||||||| |||||||    
T  37077852 tgagtatgaaagataaaattgttacaaaaattatcaaaaaatagttgttcaaatat 37077797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 2221056 - 2220990
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt-tttctctta 73  Q
    ||||||||||||| ||| || ||||||||||| ||||||| ||| ||| |||||||| |||||||||    
T  2221056 tgagtatgagagagaaagttatcacaaaaattgtcacaaaatagatgttcaaatattatttctctta 2220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 15273470 - 15273428
Alignment:
Q  25 attgtcacaaaaattatcacaaattagttgtacaaatattttt 67  Q
    |||||| |||||||||||||||| ||||||| |||||||||||    
T  15273470 attgtcccaaaaattatcacaaaatagttgttcaaatattttt 15273428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 5167749 - 5167805
Alignment:
Q  8 tgagtatgagagaaaaaattgtc-acaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||||||||| | ||||||| ||||||| | |||||||||||||    
T  5167749 tgagtatgagagagaaaattgtctaaaaaaattgtcacaaagtggttgtacaaatat 5167805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 12498643 - 12498675
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaatt 39  Q
    |||||||||||||||||| ||||||||||||||    
T  12498643 atgagtatgagagaaaaagttgtcacaaaaatt 12498675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 30487453 - 30487504
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaa 60  Q
    ||||||||||||| ||| |||| |||||| || ||||||||||||||||||||    
T  30487453 tgagtatgagagataaagttgt-acaaaagttgtcacaaattagttgtacaaa 30487504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 30546376 - 30546412
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatca 43  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  30546376 atgaatatgagagagaaaattgtcacaaaaattatca 30546412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 34802 - 34857
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||||| ||||||| |||||||||| ||||||||||||    
T  34802 tgagtatgagagagaaagttgtcataaaaattgtcacaaattaattgtacaaatat 34857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32725789 - 32725843
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||||||  ||||||||||||||| | |||||||||||||    
T  32725789 tgagtatgagagaaaaaattgtc-taaaaattatcacaaagtggttgtacaaatat 32725843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45405992 - 45406047
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||||||||| ||||||||||||| | ||| ||||||| |||||||    
T  45405992 tgagtatgagagaaaaaattatcacaaaaattattaaaaaatagttgttcaaatat 45406047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 2621846 - 2621793
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||| ||||| ||| ||||||||||| ||||||||||||||||||| ||||||    
T  2621846 agtataagagataaagttgtcacaaaagttatcacaaattagttgtataaatat 2621793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 30927939 - 30927994
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||    
T  30927939 atgagtatgagagagaaagttgt-acaaaaattgtcacaaattggttgtacaaatat 30927994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 5600995 - 5601050
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||||||||||||||| || ||| ||| | ||||| |||||||    
T  5600995 tgagtatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatat 5601050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 5639625 - 5639570
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||||||||||||||| || ||| ||| | ||||| |||||||    
T  5639625 tgagtatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatat 5639570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 14228769 - 14228715
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  14228769 tgagtatgagagagaaagttgt-acaaaagttatcacaaaatagttgtacaaatat 14228715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 22960425 - 22960480
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||||| ||||||||  ||| | |||||||||||||    
T  22960425 tgagtatgagagataaaattgtcacagaaattatcctaaaatggttgtacaaatat 22960480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 38779088 - 38779037
Alignment:
Q  13 atgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatatt 64  Q
    |||||||| |||||||||| ||||||| ||||||| | ||||||||||||||    
T  38779088 atgagagagaaaattgtcaaaaaaattgtcacaaagtggttgtacaaatatt 38779037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 43186358 - 43186304
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| ||||||||||||||||| || ||||||||||||    
T  43186358 tgagtatgagagagaaagttgt-acaaaaattatcacaaaataattgtacaaatat 43186304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 8645229 - 8645192
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcac 44  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  8645229 atgagtatgagagagaaaattgtcccaaaaattatcac 8645192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 28756598 - 28756565
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    ||||||||||||| ||||||||||||||||||||    
T  28756598 tgagtatgagagataaaattgtcacaaaaattat 28756565  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 44712038 - 44711986
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| |||||||||| ||||||||| |||||||| ||||| ||||||    
T  44712038 agtatgagagagaaaattgtca-aaaaattattacaaattaattgtataaatat 44711986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 3650176 - 3650121
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||| | ||||||||| ||||||| |||||||||||||    
T  3650176 atgagtatgagagagaaagttgtta-aaaaattattacaaattggttgtacaaatat 3650121  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 28756723 - 28756691
Alignment:
Q  9 gagtatgagagaaaaaattgtcacaaaaattat 41  Q
    |||||||||||| ||||||||||||||||||||    
T  28756723 gagtatgagagataaaattgtcacaaaaattat 28756691  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 31249533 - 31249561
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaa 36  Q
    |||||||||||||||||||||||||||||    
T  31249533 tgagtatgagagaaaaaattgtcacaaaa 31249561  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 1295394 - 1295340
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||    
T  1295394 tgagtatgagagaaaaagttgtc-caaaagttatcacaaaatagttgtacaaatat 1295340  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 38944150 - 38944204
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||| |||||| || |||||||||||||||||||||||    
T  38944150 tgagtatgagagagaaaattgt-acaaaagttgtcacaaattagttgtacaaatat 38944204  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42672847 - 42672898
Alignment:
Q  12 tatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||| |||||||    
T  42672847 tatgagagaaaaatttgtcacaaaaattatcaaaaaatagttgtgcaaatat 42672898  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 1648171 - 1648232
Alignment:
Q  202 tatgtcaacaaatcttaactcaattagcaataatgtcaaaattgttaggttggatgtcgtga 263  Q
    |||||| |||| ||||||||||| |||||| |||||||||||| | ||||||||||| ||||    
T  1648171 tatgtccacaagtcttaactcaactagcaaaaatgtcaaaattttaaggttggatgttgtga 1648232  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 29800560 - 29800612
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||||| |||||  ||||||||||||||| |||||||||||||||    
T  29800560 agtatgagagaaaaagttgtct-aaaaattatcacaaagtagttgtacaaatat 29800612  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 50559222 - 50559275
Alignment:
Q  10 agtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| ||||||||||||||| || ||| ||| |||||||||||||||    
T  50559222 agtatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaatat 50559275  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 28920057 - 28920113
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||||||||||||||| |  || |||||||||||||||    
T  28920057 atgagtatgagagagaaagttgtcacaaaaattattatcaaatagttgtacaaatat 28920113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 46344477 - 46344422
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||| ||||||||| |||||||| ||||||||| | |||||||||||||||||||||    
T  46344477 atgaatatgagagagaaaattgt-acaaaaattgtaacaaattagttgtacaaatat 46344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 48789391 - 48789335
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||| ||||| |||||||||||||||||| ||| || |||| |||||||    
T  48789391 atgagtatgagataaaaagttgtcacaaaaattatcagaaaataattgttcaaatat 48789335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 6178434 - 6178488
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||||||||||||||| || ||| ||| |||||||||||||||    
T  6178434 tgagtatgagagagaaaattgtcacaaaagttgtca-aaaatagttgtacaaatat 6178488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 42699897 - 42699846
Alignment:
Q  22 aaaattgtcacaaaaattatcacaaattagttgtacaaatatttttctctta 73  Q
    |||||| |||||||| |||| ||||| ||||||||||||||||||| |||||    
T  42699897 aaaattatcacaaaagttataacaaaatagttgtacaaatatttttttctta 42699846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 21660148 - 21660111
Alignment:
Q  29 tcacaaaaattatcacaaattagttgtacaaatatttt 66  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  21660148 tcacaaaaattatcataaaatagttgtacaaatatttt 21660111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 31157686 - 31157719
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattat 41  Q
    ||||||| ||||||||||||||||||||||||||    
T  31157686 tgagtataagagaaaaaattgtcacaaaaattat 31157719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 51137050 - 51137099
Alignment:
Q  14 tgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||| ||||||||||| |||| | ||| |||||||||||||||    
T  51137050 tgagagaaaaagttgtcacaaaagttattaaaaaatagttgtacaaatat 51137099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 27168689 - 27168745
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||||||||||||| ||| |||||||||||||||| | ||| | ||||| |||||||    
T  27168689 atgagtatgagagagaaagttgtcacaaaaattattaaaaaatggttgttcaaatat 27168745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 40367672 - 40367640
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaatt 39  Q
    |||||||||||||| ||||||||||||||||||    
T  40367672 atgagtatgagagagaaaattgtcacaaaaatt 40367640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 52963323 - 52963379
Alignment:
Q  7 atgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    |||| ||||||||||||||||||||||||| || | | ||| | |||||||||||||    
T  52963323 atgaatatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatat 52963379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 36064 - 36010
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||| ||||| ||| |||||| ||||||||||||||| |||||||||||||||    
T  36064 tgagtataagagagaaagttgtca-aaaaattatcacaaagtagttgtacaaatat 36010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 18657 - 18603
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||||||||||| ||| |||| |||||| |||||||||||| |||||||||||||    
T  18657 tgagtatgagagagaaagttgt-acaaaagttatcacaaattggttgtacaaatat 18603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 469646 - 469701
Alignment:
Q  8 tgagtatgagagaaaaaattgtcacaaaaattatcacaaattagttgtacaaatat 63  Q
    ||||| ||||||| ||| |||||||||||||||||| ||| | |||||||||||||    
T  469646 tgagtgtgagagagaaagttgtcacaaaaattatcaaaaaatggttgtacaaatat 469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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