View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_high_8 (Length: 343)
Name: NF4414_high_8
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 28 - 333
Target Start/End: Complemental strand, 36329951 - 36329645
Alignment:
| Q |
28 |
tatcaaattatgttcaaaattttagcagcatggatgaataaaatatggactttaatttcacacacattcaattactactgccaaaagtgatgtatatatt |
127 |
Q |
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| T |
36329951 |
tatcaaattatgttgaaaattttagcagcatggatgaataaaatgtggactttaatttcacacacattcaattactactgccaaaagtgatgtatatatt |
36329852 |
T |
|
| Q |
128 |
cttgatacattatgagatgacgtagtagacaagccataaccctcttgactagcataatatgaaaaatttaagttcaaatgtattttgaga-ttttagcct |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36329851 |
cttgatacattatgagatgacgtagtagacaagccataaccctcttgactagcataatatgaaaaatttaagttcaaatgtattttgagatttttagcct |
36329752 |
T |
|
| Q |
227 |
gtattcaaatttcaagtgtcttttggagtttaaggataaaataagcactaaccacattgttatatttctgtttgcaaagcattcnnnnnnnattgatgtt |
326 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36329751 |
gtattcaaatttcaagtgtcttttggagtttaagaataaaataagcactaaccacattgttatatttctgtttgcaaagcattctttttttattgatgtt |
36329652 |
T |
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| Q |
327 |
gtctgtg |
333 |
Q |
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||||||| |
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| T |
36329651 |
gtctgtg |
36329645 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7539534 - 7539571
Alignment:
| Q |
1 |
ttaacataggtttcttacttggtaatctatcaaattat |
38 |
Q |
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| T |
7539534 |
ttaacataggtttcttacttggttatctctcaaattat |
7539571 |
T |
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