View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_high_9 (Length: 340)
Name: NF4414_high_9
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 34239476 - 34239815
Alignment:
| Q |
1 |
gtatttgaattactactcacctttcttttccacctccaattttgagcaactcaccgtacaattccacgtcccatgtaacgcctagttctttctgcacaac |
100 |
Q |
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| T |
34239476 |
gtatttgaattactactcacctttcttttccacctccaattttgagcaactcaccgtacaattccacgtcccatgtaacgcctagttctttctgcacaac |
34239575 |
T |
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| Q |
101 |
tcaacaacacattcaagtgttattgctaaagcatctcagttagtgtactactttcgattgcatactagttccaaggcgtaggtggctgaggtaggatgaa |
200 |
Q |
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| T |
34239576 |
tcaacaacacattcaagtgttattgctaaagcatctcagttagtgtactactttcgattgcatactagttccaaggcgtaggtggctgaggtaggatgaa |
34239675 |
T |
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| Q |
201 |
ggcattctagttctaggattcaaacctgattactaaggttagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttattgta |
300 |
Q |
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| T |
34239676 |
gacattctagttctaggattcaaacctgattactaaggttagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttattgta |
34239775 |
T |
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| Q |
301 |
cacgctagttgttctatacttttatcttatcaatgacttc |
340 |
Q |
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| T |
34239776 |
cacgctagttgttctatacttttatcttatcaatgacttc |
34239815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 35093967 - 35094025
Alignment:
| Q |
239 |
ttagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttatt |
297 |
Q |
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| T |
35093967 |
ttagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttatt |
35094025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40563 - 40620
Alignment:
| Q |
240 |
tagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttatt |
297 |
Q |
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||||||||||||| |||||||| |||||||| |||||| | ||||||||| |||||| |
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| T |
40563 |
tagatgtaaaagtaagttacactagttagttaatctaattgactatataagccttatt |
40620 |
T |
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