View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4414_low_1 (Length: 836)
Name: NF4414_low_1
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Complemental strand, 12861763 - 12861065
Alignment:
| Q |
19 |
aaacttgaaagagcttcaccattgaactcgtaattcctcagatcctgaggatttttccacatttgcaagcgatgatcaaatctctccagcttcctacgat |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861763 |
aaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcgatgatcaaatctctccagcttcctacgat |
12861664 |
T |
|
| Q |
119 |
ctgcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861663 |
ctgcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataag |
12861564 |
T |
|
| Q |
219 |
acagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861563 |
acagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcgg |
12861464 |
T |
|
| Q |
319 |
aggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12861463 |
aggtattgaaggtgatgatcgagcatagtacggagccagtttgttacaacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcgtgaa |
12861364 |
T |
|
| Q |
419 |
tgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttgg |
518 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861363 |
tgtagacatggtaagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttctttgt |
12861264 |
T |
|
| Q |
519 |
cgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttaca |
618 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
12861263 |
cgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagagcaatttggaatttcccgcgccaggatttatttataaaacggttgta |
12861167 |
T |
|
| Q |
619 |
acaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaa |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12861166 |
acaaccaatttcttcgtttcagagtttccacagttttttttatttaatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaa |
12861067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 315 - 825
Target Start/End: Original strand, 12844050 - 12844555
Alignment:
| Q |
315 |
gcggaggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttca |
414 |
Q |
| |
|
||||||| |||||| ||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844050 |
gcggagggattgaaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttca |
12844149 |
T |
|
| Q |
415 |
tgaatgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttct |
514 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844150 |
tgaatgtagacatggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacggtgtaaagatttcttttct |
12844249 |
T |
|
| Q |
515 |
ttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggt |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844250 |
ttggcgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggt |
12844346 |
T |
|
| Q |
615 |
tacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggt |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844347 |
tacaacaaccaatttcttcgtttcagagtttccacag-tttttttatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggt |
12844445 |
T |
|
| Q |
715 |
ttaattgtgtatgannnnnnnnnnnnnnnnngttgtggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggt |
814 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12844446 |
ttaattgtctatgatttttcatttttttttt-ttttggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggt |
12844544 |
T |
|
| Q |
815 |
ctttggttcat |
825 |
Q |
| |
|
||||||||||| |
|
|
| T |
12844545 |
ctttggttcat |
12844555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 12843723 - 12844009
Alignment:
| Q |
24 |
tgaaagagcttcaccattgaactcgtaattcctcagatcctgaggatttttccacatttgcaagcgatgatcaaatctctccagcttcctacgatctgca |
123 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
12843723 |
tgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagca |
12843822 |
T |
|
| Q |
124 |
gcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
12843823 |
gcgttccagaatccaacgaaggtgttcttaggatgacggagaaagttgcagagactaaccggaatcatatcggcgagagagaggtggaagataagacagc |
12843922 |
T |
|
| Q |
224 |
tgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattac |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
12843923 |
tgccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaatgagattac |
12844009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 777 - 816
Target Start/End: Complemental strand, 12861000 - 12860961
Alignment:
| Q |
777 |
tatgttgagcatactacggttagcacaaggctataggtct |
816 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
12861000 |
tatgttgagcatactacggttagcaaagggctataggtct |
12860961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University