View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4414_low_12 (Length: 315)

Name: NF4414_low_12
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4414_low_12
NF4414_low_12
[»] chr5 (1 HSPs)
chr5 (16-308)||(35884481-35884770)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 35884481 - 35884770
Alignment:
Q  16 ggaagaagattcaatagtgaatgtatttggtagttatgtgattgcttgatttataagtggagcataaaatggatttaggtgtgcagtatatttacttgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  35884481 ggaagaagattcaatagtgaatgtatttggtagttatgtgattgcttgatttatatgtggagaataaaatggatttaggtgtgcagtatatttacttgag 35884580  T
Q  116 tacgaactagaaggaaatttcttgaattttaaagagctgttccataatcttagtgacatacttgcccaaccaacatcaaaatcaaaatgaatttaattta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35884581 tacgaactagaaggaaatttcttgaattttaaagagctgttccataatcttagtgacatacttgcccaaccaacatcaaaatcaaaatgaatttaattta 35884680  T
Q  216 tagtaacaaaattttaaacatacaattgacttaccttatcagaagaagatgactaccaatgtaattttggatggtagttgtatgcctttgctt 308  Q
    |||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35884681 tagtaacaaaattttacacatacaattgacttaccttatc---agaagatgactaccaatgtaattttggatggtagttgtatgtctttgctt 35884770  T

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