View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_low_17 (Length: 251)
Name: NF4414_low_17
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 40759999 - 40760239
Alignment:
| Q |
11 |
cacagatgtaaaataaataacatccaaggaactaaaacaactacaaacctgctacatctttttcgtcaatcagctgttgaacttcatttgtatgtgaaca |
110 |
Q |
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| T |
40759999 |
cacagatgtaaaataaataacatacaaggaactaaaacaactacaaacctgctacatctttttcgtcaatcagctgttgaacttcatttgtatgtgaaca |
40760098 |
T |
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| Q |
111 |
atactggtaatagtggagaatctgaaactgnnnnnnnnnnnnnntatagacataatgatgactttatannnnnnnnaacgtgccaactataccagcaaca |
210 |
Q |
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| T |
40760099 |
atactggtaatagtggagaatctgaaactgaaaaagcaaaaaaatatagacataatgatgactttatattttttttaacgtgccaactataccagcaaca |
40760198 |
T |
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| Q |
211 |
aattgacacacacaccagatcctctatactcaaatgcactt |
251 |
Q |
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| T |
40760199 |
aattgacacacacaccagatcctctatactcaaatgcactt |
40760239 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 38634408 - 38634334
Alignment:
| Q |
63 |
tacatctttttcgtcaatcagctgttgaacttcatttgtatgtgaacaatactggtaatagtggagaatctgaaa |
137 |
Q |
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| T |
38634408 |
tacatctttttcttctgccagctgatggactttatttataagtgaacaatgctggtaatagtggagaatctgaaa |
38634334 |
T |
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