View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_low_2 (Length: 752)
Name: NF4414_low_2
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 19 - 740
Target Start/End: Original strand, 16194792 - 16195513
Alignment:
| Q |
19 |
agcttatgtggtgagcaatgaaatatgtccaagctcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16194792 |
agcttatgtggtgagcaatgaaatatgtccaagctcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttc |
16194891 |
T |
|
| Q |
119 |
cctacaccttcatcaactctctacatgttcatgtggcttccaatgggagttctgttatctacttatagaatttttcttgtgttgaactttcattacaaat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16194892 |
cctacaccttcatcaactctctacatgttcatgtggcttccaatgggaattctgttatctacatatagaatttttcttgtgttgaactttcattacaaat |
16194991 |
T |
|
| Q |
219 |
ggaccctttcattaataacatttagtggtatagttctgaatgtcaaaggctttagtaaccctcaaagatatttagaaccaagtaaaggggaactctatgt |
318 |
Q |
| |
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|||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16194992 |
ggacactatcattaataacatttaatggtatagttcttaatgtcaaaggctttagtaaccctcaaagatatttagaaccaagtaaaggggaactctatgt |
16195091 |
T |
|
| Q |
319 |
ttgtacacataggactttgttagatcctgtttttcttagcatgagtctgagaaaacctttgagttgtgtgacttacagcataagcaaagtgtcggaattc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195092 |
ttgtacacataggactttgttagatcctgtttttcttagcatgagtctgagaaaacctttgagttgtgtgacttacagcataagcaaagtgtcggaattc |
16195191 |
T |
|
| Q |
419 |
ttcgctcctattaggacaatgagtttgacaagagacagagaacaagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcctg |
518 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||| |
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|
| T |
16195192 |
ttcgctcctattcggacaatgagtttgacaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctg |
16195291 |
T |
|
| Q |
519 |
aaggaacaacttgtagggagccttatctattgagatttagttcactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtgag |
618 |
Q |
| |
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||||||||||||||||||| |||||| |||| || ||||||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
16195292 |
aaggaacaacttgtagggaaccttatttattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgag |
16195391 |
T |
|
| Q |
619 |
tttgttttatggtacaacagctagtggattaaaatgtttggacccttttctatttttgatgaatgcatggccaagttataacattgaaatgcttgacaaa |
718 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
16195392 |
tatgttttatggtacaacagctagtggattaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaa |
16195491 |
T |
|
| Q |
719 |
gttccaagagaactcacttgtg |
740 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
16195492 |
gttccaaaagaactcacttgtg |
16195513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 24 - 740
Target Start/End: Complemental strand, 16148144 - 16147422
Alignment:
| Q |
24 |
atgtggtgagcaatgaaatatgtccaagctcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttccctac |
123 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
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|
| T |
16148144 |
atgtggtgagcaatgaaatatgtccaagttcaatcatgccaaaggaaaagtatccaaagccattaatatttcatgatggaagactagcatttttccctac |
16148045 |
T |
|
| Q |
124 |
accttcatcaactctctacatgttcatgtggcttccaatgggagttctgttatctacttatagaatttttcttgtgttgaactttcattacaaatggacc |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | | ||| ||||| | ||||||| | ||||||| | || ||||||||||| |
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| T |
16148044 |
accttcatcaactctctacatgttcatgtggcttccattttcaattccattatcaatttatagattatttcttggcacaatagtttattacaaatgggga |
16147945 |
T |
|
| Q |
224 |
ctttcattaataacatttagtggtatagttctgaatgtcaaaggctttagta------accctcaaagatatttagaaccaagtaaaggggaactctatg |
317 |
Q |
| |
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||| ||||| || ||| |||||||||| | | ||| ||||||||| ||||| ||||| ||| | || | | ||| ||||| | |||||||| |
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|
| T |
16147944 |
cttgcattagtagcatatagtggtataactataaatatcaaaggctatagtattacaaaccctaaaaaaatttcaataacaaacaaaggtgtactctatg |
16147845 |
T |
|
| Q |
318 |
tttgtacacataggactttgttagatcctgtttttcttagcatgagtctgagaaaacctttgagttgtgtgacttacagcataagcaaagtgtcggaatt |
417 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | || ||||| ||| |||||||||||||||| | |
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|
| T |
16147844 |
tttgtacacataggacattattagatcctgtttttcttagcatgagtttgagaaaacctttaacaacggtaacttatagcttaagcaaagtgtcggagat |
16147745 |
T |
|
| Q |
418 |
cttcgctcctattaggacaatgagtttgacaagagacagagaacaagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcct |
517 |
Q |
| |
|
| | |||| |||| ||| |||||||| ||||| || |||||||||||||||||||||||||||||| || |||| ||||||||||| ||||| |||||| |
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|
| T |
16147744 |
catgtctccgattaagacgatgagtttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcct |
16147645 |
T |
|
| Q |
518 |
gaaggaacaacttgtagggagccttatctattgagatttagttcactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtga |
617 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
16147644 |
gaaggaacaacttgtagggaaccttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtga |
16147545 |
T |
|
| Q |
618 |
gtttgttttatggtacaacagctagtggattaaaatgtttggacccttttctatttttgatgaatgcatggccaagttataacattgaaatgcttgacaa |
717 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||| | ||||| || |
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| T |
16147544 |
gtatgttttatggtacaacagctagtggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaa |
16147445 |
T |
|
| Q |
718 |
agttccaagagaactcacttgtg |
740 |
Q |
| |
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|| |||| |||||||||||||| |
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| T |
16147444 |
ggtaccaaaagaactcacttgtg |
16147422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 446 - 682
Target Start/End: Complemental strand, 39975938 - 39975702
Alignment:
| Q |
446 |
acaagagacagagaacaagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcctgaaggaacaacttgtagggagccttatc |
545 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| | | ||||| ||||||||||| ||||| ||||||||||||||||| ||||| || || ||| |
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|
| T |
39975938 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
39975839 |
T |
|
| Q |
546 |
tattgagatttagttcactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtgagtttgttttatggtacaacagctagtgg |
645 |
Q |
| |
|
| || || ||||||||| | |||||||| | || ||||||| || |||||||| |||||| || |||| || |||||||||| || ||||| || || |
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| T |
39975838 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
39975739 |
T |
|
| Q |
646 |
attaaaatgtttggacccttttctatttttgatgaat |
682 |
Q |
| |
|
||| || |||||||| ||| || | || ||||||||| |
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|
| T |
39975738 |
attgaagtgtttggatcctatttttttcttgatgaat |
39975702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 39976325 - 39976216
Alignment:
| Q |
53 |
tcaattatgccaagggaaaagtatccaaagccattaatatttcatgatggcaggctagcattcttccctacaccttcatcaactctctacatgttcatgt |
152 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| || ||||| | | |||| |||||||||||||||| |
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|
| T |
39976325 |
tcaatcatgccaagggacaaatatccaaagccattaatatttcatgatggaagattagcattcttgccaacaccattagcaacactctacatgttcatgt |
39976226 |
T |
|
| Q |
153 |
ggcttccaat |
162 |
Q |
| |
|
|||| ||||| |
|
|
| T |
39976225 |
ggctaccaat |
39976216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 660
Target Start/End: Complemental strand, 25552961 - 25552813
Alignment:
| Q |
512 |
tgtcctgaaggaacaacttgtagggagccttatctattgagatttagttcactttttgctgaactttctgatgagattgttcctgtggctatgaatgcta |
611 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| | | || |||||| | | |||||||| || ||||||| ||||||||||| ||| | ||| || |
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| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgagctaactgatgatattgttcctgttgctgttgatgtta |
25552862 |
T |
|
| Q |
612 |
atgtgagtttgttttatggtacaacagctagtggattaaaatgtttgga |
660 |
Q |
| |
|
| || ||| |||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
25552861 |
aggttagtatgttttatggaacaacagctagtgggtataaatgtttgga |
25552813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 28538371 - 28538457
Alignment:
| Q |
74 |
tatccaaagccattaatatttcatgatggcaggctagcattcttccctacaccttcatcaactctctacatgttcatgtggcttccaat |
162 |
Q |
| |
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||||||||||||||| ||||||||| || || ||||||||||| |||||||| ||| ||||| ||| ||||||| ||||| ||||||| |
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| T |
28538371 |
tatccaaagccattagtatttcatggtg--agactagcattcttgcctacaccctcagcaactttctgcatgttcgtgtggattccaat |
28538457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 512 - 570
Target Start/End: Complemental strand, 4470552 - 4470494
Alignment:
| Q |
512 |
tgtcctgaaggaacaacttgtagggagccttatctattgagatttagttcactttttgc |
570 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||||||| |||||| | |||||||| |
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|
| T |
4470552 |
tgtccggaaggaacgacttgtagggagccatttctattgaggtttagtgctctttttgc |
4470494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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