View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_low_22 (Length: 201)
Name: NF4414_low_22
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 39557452 - 39557615
Alignment:
| Q |
19 |
caaggtcggtgggtgagtgtgttctgcccataccttattatctcctagactgcctctgccactattgtgagccaaaagctacctaaaaagcataatttat |
118 |
Q |
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| T |
39557452 |
caaggtcggtgggtgagtgtgttctgcccataccttattatctcctagactgcctctgccactattgtgagccaaaagctacctaaaaagcataatttat |
39557551 |
T |
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| Q |
119 |
catatatcattggggttggtagggtggccacattactattcaatattatctatttgttgatgcc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39557552 |
catatatcattggggttggtagggtggccacattactattcaatattatctatttgtcgatgcc |
39557615 |
T |
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