View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_low_3 (Length: 673)
Name: NF4414_low_3
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 12861601 - 12861065
Alignment:
| Q |
18 |
accggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861601 |
accggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtcc |
12861502 |
T |
|
| Q |
118 |
attgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
12861501 |
attgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcatagtacggagccagtttgttacaacggaagcagtggc |
12861402 |
T |
|
| Q |
218 |
ggtaacggtgacttcgaagttgatttggctttcatgaatgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaa |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
12861401 |
ggtaacggtgacttcgaagttgatttggctttcgtgaatgtagacatggtaagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaa |
12861302 |
T |
|
| Q |
318 |
gccatgagaatgacggtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttgg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
12861301 |
gccatgagaatgacggtgtaaagatttcttttctttgtcgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagagcaatttgg |
12861205 |
T |
|
| Q |
418 |
aatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgt |
517 |
Q |
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| T |
12861204 |
aatttcccgcgccaggatttatttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagttttttttatttaatttatattaaaatgt |
12861105 |
T |
|
| Q |
518 |
aaaataaagtcgcatttacttttaatattggggtttaatt |
557 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
12861104 |
aaaataaagttgcatttacttttaatattggggtttaatt |
12861065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 152 - 662
Target Start/End: Original strand, 12844050 - 12844555
Alignment:
| Q |
152 |
gcggaggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttca |
251 |
Q |
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||||||| |||||| ||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12844050 |
gcggagggattgaaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttca |
12844149 |
T |
|
| Q |
252 |
tgaatgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacggtgtaaagatttcttttct |
351 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12844150 |
tgaatgtagacatggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacggtgtaaagatttcttttct |
12844249 |
T |
|
| Q |
352 |
ttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggt |
451 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844250 |
ttggcgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggt |
12844346 |
T |
|
| Q |
452 |
tacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggt |
551 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844347 |
tacaacaaccaatttcttcgtttcagagtttccacag-tttttttatttaatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggt |
12844445 |
T |
|
| Q |
552 |
ttaattgtgtatgannnnnnnnnnnnnnnnngttgtggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggt |
651 |
Q |
| |
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|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844446 |
ttaattgtctatgatttttcatttttttttt-ttttggcaattggctatgtttctatcactatatgttgagcatactacggttagcacaaggctataggt |
12844544 |
T |
|
| Q |
652 |
ctttggttcat |
662 |
Q |
| |
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||||||||||| |
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| T |
12844545 |
ctttggttcat |
12844555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 12843880 - 12844009
Alignment:
| Q |
18 |
accggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtcc |
117 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
12843880 |
accggaatcatatcggcgagagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtcc |
12843979 |
T |
|
| Q |
118 |
attgaacgccgaggccgacaacaagattac |
147 |
Q |
| |
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|||||||||| |||||||||| ||||||| |
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| T |
12843980 |
attgaacgccaaggccgacaatgagattac |
12844009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 653
Target Start/End: Complemental strand, 12861000 - 12860961
Alignment:
| Q |
614 |
tatgttgagcatactacggttagcacaaggctataggtct |
653 |
Q |
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||||||||||||||||||||||||| | |||||||||||| |
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| T |
12861000 |
tatgttgagcatactacggttagcaaagggctataggtct |
12860961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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