View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4414_low_5 (Length: 412)

Name: NF4414_low_5
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4414_low_5
NF4414_low_5
[»] chr4 (6 HSPs)
chr4 (11-394)||(45738635-45739019)
chr4 (116-270)||(45733334-45733488)
chr4 (301-376)||(35723391-35723467)
chr4 (316-367)||(20521871-20521922)
chr4 (316-366)||(12077815-12077865)
chr4 (318-366)||(20743302-20743350)
[»] chr7 (2 HSPs)
chr7 (301-367)||(32308106-32308172)
chr7 (301-367)||(22868028-22868094)
[»] chr1 (4 HSPs)
chr1 (302-367)||(6427336-6427401)
chr1 (318-367)||(2896145-2896194)
chr1 (318-367)||(36878447-36878496)
chr1 (319-367)||(9709806-9709854)
[»] chr8 (2 HSPs)
chr8 (301-361)||(31236584-31236644)
chr8 (320-372)||(13844622-13844674)
[»] chr2 (2 HSPs)
chr2 (316-364)||(18420456-18420504)
chr2 (318-366)||(21782842-21782890)
[»] chr6 (5 HSPs)
chr6 (301-367)||(7265600-7265666)
chr6 (299-364)||(19040341-19040406)
chr6 (316-349)||(32299279-32299312)
chr6 (301-345)||(9617442-9617486)
chr6 (301-345)||(30866151-30866195)
[»] chr5 (2 HSPs)
chr5 (318-376)||(28588698-28588756)
chr5 (316-372)||(31084304-31084360)
[»] scaffold0085 (1 HSPs)
scaffold0085 (301-345)||(26401-26445)
[»] chr3 (1 HSPs)
chr3 (316-360)||(13807162-13807206)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 45739019 - 45738635
Alignment:
Q  11 acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagnnnnnnn-gcaactcatgggttgggcaatagctttacacggcggcgccggc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  45739019 acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagaaaaaaaagcaactcatgggttgggcaatagctttacacggcggcgccggc 45738920  T
Q  110 gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738919 gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg 45738820  T
Q  210 cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738819 cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac 45738720  T
Q  310 aatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtt 394  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738719 aatgaaattgaattatatgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtt 45738635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 116 - 270
Target Start/End: Complemental strand, 45733488 - 45733334
Alignment:
Q  116 ccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctc 215  Q
    |||| ||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  45733488 ccattttcacttccaccggaagcccgtcagccacgcgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctc 45733389  T
Q  216 tagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttc 270  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  45733388 tagacgtcgttgagcttgttgtatgtattcatcactcacaatatttatcactttc 45733334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 35723391 - 35723467
Alignment:
Q  301 gacacatacaatgaaattgaattatgtg-attttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 376  Q
    |||||||| ||| | ||||||||||||| ||||||||| ||||||| | || | |||||||||||||||||||||||    
T  35723391 gacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtcatgtcgtgt 35723467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 20521871 - 20521922
Alignment:
Q  316 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||||||||||||| ||| ||||||||| || | ||||||||||||||    
T  20521871 attgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 12077865 - 12077815
Alignment:
Q  316 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 366  Q
    |||||||||||||||||||||| ||||||| |||| | | |||||||||||    
T  12077865 attgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgt 12077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 20743302 - 20743350
Alignment:
Q  318 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 366  Q
    |||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  20743302 tgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 32308172 - 32308106
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 22868094 - 22868028
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||| ||| | | ||||||||||||||||||||||||||||   || | ||||||||||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 6427401 - 6427336
Alignment:
Q  302 acacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    ||||||| ||| | |||||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 2896145 - 2896194
Alignment:
Q  318 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 36878496 - 36878447
Alignment:
Q  318 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  36878496 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 9709854 - 9709806
Alignment:
Q  319 gaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    ||||||||||||||||||| ||||||| | || ||||| ||||||||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtc 9709806  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 31236584 - 31236644
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtc 361  Q
    |||||||| ||| | |||||||||||||||||||||| ||||||| |||| | ||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 13844622 - 13844674
Alignment:
Q  320 aattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 372  Q
    |||||||||||||||||| ||||||| |||| | |||||||| ||||| ||||    
T  13844622 aattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 18420456 - 18420504
Alignment:
Q  316 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 364  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||||||    
T  18420456 attgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 21782842 - 21782890
Alignment:
Q  318 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 366  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  21782842 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 7265600 - 7265666
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 367  Q
    |||||||| ||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 19040406 - 19040341
Alignment:
Q  299 cagacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 364  Q
    |||||||||| ||| | | |||||||||||||||||||| ||||||| | || | |||||||||||    
T  19040406 cagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 19040341  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 32299312 - 32299279
Alignment:
Q  316 attgaattatgtgattttctcatattattatcag 349  Q
    |||||||||||||||||||||| |||||||||||    
T  32299312 attgaattatgtgattttctcaaattattatcag 32299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 9617486 - 9617442
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattatta 345  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  9617486 gacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 30866151 - 30866195
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattatta 345  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 28588698 - 28588756
Alignment:
Q  318 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 376  Q
    |||||||||||||||||||| ||||||| | || | ||||||||| ||| |||||||||    
T  28588698 tgaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgttatgtcgtgt 28588756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 31084360 - 31084304
Alignment:
Q  316 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 372  Q
    |||||||||||||||||| ||| ||||||| | || | |||||||||||||| ||||    
T  31084360 attgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 26445 - 26401
Alignment:
Q  301 gacacatacaatgaaattgaattatgtgattttctcatattatta 345  Q
    |||||||| || || |||||||||||||||||||||| |||||||    
T  26445 gacacatataacgacattgaattatgtgattttctcaaattatta 26401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 13807206 - 13807162
Alignment:
Q  316 attgaattatgtgattttctcatattattatcagtctaggcgtgt 360  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgttggcgtgt 13807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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