View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4414_low_6 (Length: 393)
Name: NF4414_low_6
Description: NF4414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4414_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 35789775 - 35790128
Alignment:
| Q |
21 |
cagaacctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctatta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
35789775 |
cagaacctgttttttgcattgttgaatgcctctttgacggcagaatcgtcccagtttaccacattgggatgtagacacatatatttcttgacttctatta |
35789874 |
T |
|
| Q |
121 |
tctttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaataga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789875 |
tctttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaataga |
35789974 |
T |
|
| Q |
221 |
atcaattg--atatctacttgaacatagccaaaatcaagacattataagatcatcaaaatataacaccataatcaaaacagtttcatgtatgataagttg |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789975 |
atcaattgatatatctacttgaacatagccaaaatcaagacattataag---atcaaaatataacaccataatcaaaacagtttcatgtatgataagttg |
35790071 |
T |
|
| Q |
319 |
catataacaattaaccaatttaatgagatagggttttgtttataatgtgtcacgataa |
376 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35790072 |
catataac-actaaccaatttaatgagatagggttttgtttaaaatgtgtcacgataa |
35790128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 35760991 - 35761195
Alignment:
| Q |
27 |
ctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctttc |
126 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||||| |
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| T |
35760991 |
ctgttttttgcattgtcaaatgcctctttgacagcagagtcgtcccagtttaccacattgggatgcagatacatatacttcttgccttctattacctttc |
35761090 |
T |
|
| Q |
127 |
gccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatcaat |
226 |
Q |
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||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||| | | |||| ||||||||||||||||| |
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| T |
35761091 |
gccatggaactgagccaaccgattcacaaaacttcttttcccacaaaggcactgttggaaacctattatctgcgaaccaaaaggaataaatagaatcaat |
35761190 |
T |
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| Q |
227 |
tgata |
231 |
Q |
| |
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||||| |
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| T |
35761191 |
tgata |
35761195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 35799422 - 35799627
Alignment:
| Q |
25 |
acctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatctt |
124 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||| | |||| || ||||| ||||||||| ||| |
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| T |
35799422 |
acctgttttttgcattgtcgaatgcctctttgacagcagagtcgtcccagtttaccactttgggatgcatatacatgtacctcttgtcttctattagctt |
35799521 |
T |
|
| Q |
125 |
tcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatca |
224 |
Q |
| |
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||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | | ||||||||||||||||||| |
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| T |
35799522 |
tcgccatggaactgagcccaccgaagcacaaaactgcttttcccacaaaggcactgttggaaacctattatctgtgaac-caaaagaataaatagaatca |
35799620 |
T |
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| Q |
225 |
attgata |
231 |
Q |
| |
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||||||| |
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| T |
35799621 |
attgata |
35799627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 35755830 - 35755986
Alignment:
| Q |
24 |
aacctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || |||||||||| |||||||||||| ||| ||||||| ||||||||||||||| || |
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| T |
35755830 |
aacctgttttttgcattgttgaatgcctcttttacagcagagtcatcccagtttaccacattgggatgtagagacatatacctcttgacttctattagct |
35755929 |
T |
|
| Q |
124 |
ttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactg |
180 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35755930 |
ttcgccatggaactgcaccaatcgaagcacaaaacttcttttcccacaaaggcactg |
35755986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 35785926 - 35786129
Alignment:
| Q |
24 |
aacctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatct |
123 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||| ||||| || ||||||||||| || ||| ||||||||| || |
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| T |
35785926 |
aacctgttttttgcattgtcaaatgcctctttgacagcagagtcgttccagtttaccactttggggtgaagacacatatacttattgccttctattacct |
35786025 |
T |
|
| Q |
124 |
ttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactgttggtaaccaattatctgttagcaaaaaagaataaatagaatc |
223 |
Q |
| |
|
||| |||||| ||||| |||| |||| ||||||||||||||||||| ||||||||||||| |||| |||| |||| | | |||| ||||| || ||||| |
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| T |
35786026 |
ttctccatggaactgaaccaaccgaattacaaaacttcttttcccacgaaggcactgttggaaacctattagctgtgaaccaaaaggaatacatggaatc |
35786125 |
T |
|
| Q |
224 |
aatt |
227 |
Q |
| |
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|||| |
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| T |
35786126 |
aatt |
35786129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 35766471 - 35766627
Alignment:
| Q |
24 |
aacctgttttttgcattgttgaatgcctctttgacagcagaatcgtcccagtttatcacattgggatgcagacacatatatttcttgacttctattatct |
123 |
Q |
| |
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|||||||| || ||||||| ||||||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||| | ||||| ||||||||| || |
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| T |
35766471 |
aacctgttcttagcattgtcgaatgcctctttgacagcagagtcgtcccagttgatcactgttggatgcagaaacataaacctcttgccttctattacct |
35766570 |
T |
|
| Q |
124 |
ttcgccatggtactgagccaatcgaagcacaaaacttcttttcccacaaaggcactg |
180 |
Q |
| |
|
| ||| | |||||||||| || ||||||||||||||| |||||| ||||||||| |
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| T |
35766571 |
tcttccacgaaactgagccaaccgtagcacaaaacttcttctcccaccaaggcactg |
35766627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 35799826 - 35799897
Alignment:
| Q |
231 |
atctacttgaacatagccaaaatcaagacattataagatcatcaaaatataacaccataatcaaaacagtttcatgta |
308 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| | ||||| ||||||| |||||||||||||||| |||||||| |
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| T |
35799826 |
atctccttgaacatggccaaaatcaagacattttcagatc----aaatata--accataatcaaaacagattcatgta |
35799897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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