View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-1 (Length: 996)
Name: NF4415-Insertion-1
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 8 - 853
Target Start/End: Complemental strand, 29020277 - 29019412
Alignment:
| Q |
8 |
aaaacaagatcaaaaggaatttaaaaagtaacatgctaaataggtacgtacaaaatttagttgattctaatcatatcaagcagtattggttcatgatata |
107 |
Q |
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| T |
29020277 |
aaaacaagatcaataggaatttaaaaagtaacatgctaaataggtacgtacaaaatttagttgattctaatcatatcaagcagtattggttcatgatata |
29020178 |
T |
|
| Q |
108 |
tgagaggaaattcatgcaagcatgctcataaaatagttagtcatggtcaatgaaactatgatgaataatgatcatgattgtaacaatgatgatcgtgacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
29020177 |
tgagaggaaattcatgcaagcatgctcataaaatagttagtcatggtcaatgaaactatgatgaataatgatcatgattgaaacaatgataattgtgacc |
29020078 |
T |
|
| Q |
208 |
accactttcagtttgccaccaaagagtatattcttttatatgctttatgaatttgttgaatttcaaaagttttagttctttagcaacctagagggttggt |
307 |
Q |
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| T |
29020077 |
accactttcagttcgccactaaagagtatattctattatatgctttatgaatttgttgaatttcaaaagttttagttctttcgcaacctagagggttggt |
29019978 |
T |
|
| Q |
308 |
ttcagttggtgagattgaactaactagtaactggtctttaggggggacataattcaacctaataattatgcaaaacatcgaannnnnnnattaatacttg |
407 |
Q |
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| T |
29019977 |
ttcagttggtgagattgaactaactagtaactggtctttaggggggacataattcaacctaataattatgcaaaacatcgaaagttttgattaatacttg |
29019878 |
T |
|
| Q |
408 |
acaaatttgagtgtaaaagaggttgaaaatgacaaccatataaaaaatctatttcaactaagaagtcaactaaatacttacataattaagacaaatatga |
507 |
Q |
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| T |
29019877 |
acaaatttgagtgtaaaagaggttgaaaatgacatccatataaaaaatctatttcaactaagaagtcaactaaatgcttaaataattaagacaaatatga |
29019778 |
T |
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| Q |
508 |
gaaagttactc-agagtgctttgagtttcatggctacaataatttttgcacttttttctaagtaattttgttaaggtttcttataagagaccaaaaagtg |
606 |
Q |
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| T |
29019777 |
gaaagttactcaagagtgctttgagtttcatggctacaataatttttgcacttttttctaagtaattttgttaaggtttcttataagagaccaaaaagtg |
29019678 |
T |
|
| Q |
607 |
taaatgtagatacatggtgatgcagccgt--agagaccattaaattt--agagtctttttctaaattgatgtagaacgactagctgcgagtatcgaaga- |
701 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
29019677 |
taaatgtagatacatggtgatgcagccgtagagagaccattaagtttagagagtctttttctaaattgatgtagaacgactagatgcgagtattgaagat |
29019578 |
T |
|
| Q |
702 |
ga------------------tttaatgagaatagtgaagatttgacatctattgtctgaatgacttgaaatataccttttcgaaaagggaatctgtccac |
783 |
Q |
| |
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|| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
29019577 |
gaagtgtcatgcaaaaaaagtttaatgagaatagtgcagatttgacatctgttgtccgaatgacttgaaatatacctttttggaaagggaatctgcccac |
29019478 |
T |
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| Q |
784 |
gagtagatcagattgtttcgccatgacatatgaacatttatagctatccgaagtcatttgaaggcccaaa |
853 |
Q |
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| T |
29019477 |
gagtagatcacattgtttcgccatgacatatgaacatttatagctatccg----catttgaaggcccaaa |
29019412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 704 - 771
Target Start/End: Original strand, 34723536 - 34723603
Alignment:
| Q |
704 |
tttaatgagaatagtgaagatttgacatctattgtctgaatgacttgaaatataccttttcgaaaagg |
771 |
Q |
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|||||| |||| |||| |||||||| ||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
34723536 |
tttaataagaagagtgtagatttgagatctagtgtctgattgacttgaaatataccttttcggaaagg |
34723603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 715 - 769
Target Start/End: Original strand, 19949691 - 19949745
Alignment:
| Q |
715 |
tagtgaagatttgacatctattgtctgaatgacttgaaatataccttttcgaaaa |
769 |
Q |
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||||| |||||| ||||| | |||| |||||||| |||||||||||||||||||| |
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| T |
19949691 |
tagtgcagattttacatccagtgtcggaatgactcgaaatataccttttcgaaaa |
19949745 |
T |
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