View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-10 (Length: 343)
Name: NF4415-Insertion-10
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 39105558 - 39105222
Alignment:
| Q |
7 |
aaccctgtttaaaaacaatgttaaaagattgaataaacatttaatagataa-tgtgtaagttagaatccgcaattctctaattcacatttctttgtttac |
105 |
Q |
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| T |
39105558 |
aaccctgtttaaaaacaatattaaaagattgaataaacatttaagagataaatgtgtaagttagaatccgcaattctctaattcacatttctttgtttac |
39105459 |
T |
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| Q |
106 |
tttaatgtttccatcgttaatccaatgtttnnnnnnnnnnnnnnntccgcgttcgtaagaaaataaaacttagannnnnnnaaagaacttgagatgttga |
205 |
Q |
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| T |
39105458 |
tttaatgtttccaacgttaatccaatgtttaaaaaaaataataaatt-gtgatcgtaagaaaataaaacttagatttttttaaagaacttgagatgttga |
39105360 |
T |
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| Q |
206 |
aaaaagttacctcttgaattgctgatctagcggcaagcgattgagattcattgatgttgagcaaatcatgtccgtaaggtccagcacaagcacacccacc |
305 |
Q |
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| T |
39105359 |
aaaaagttacctcttgaattgctgatctaacggcaagcgattgagattcattgatgttgagcaaatcatgtccgtaaggtccagcacaagcacacccacc |
39105260 |
T |
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| Q |
306 |
tcgagcttgtattccaaagagatcgtttaacaatgttg |
343 |
Q |
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| T |
39105259 |
tcgagattgtattccaaagagatcgtttaacaatgttg |
39105222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 39111383 - 39111274
Alignment:
| Q |
214 |
acctcttgaattgctgatctagcggcaagcgattgagattcattgatgttgagcaaatcatgtccgtaaggtccagcacaagcacacccacctcgagctt |
313 |
Q |
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| T |
39111383 |
acctcttgaacagctgatctaatagcaagtgattgagatttattgatgttgagtaattcatgtccataaggtccagcacaagcacacccacctcgagctt |
39111284 |
T |
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| Q |
314 |
gtattccaaa |
323 |
Q |
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| T |
39111283 |
gaatgccaaa |
39111274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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