View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4415-Insertion-13 (Length: 166)

Name: NF4415-Insertion-13
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4415-Insertion-13
NF4415-Insertion-13
[»] chr8 (13 HSPs)
chr8 (5-159)||(30432339-30432500)
chr8 (11-158)||(44081781-44081936)
chr8 (12-159)||(42162598-42162753)
chr8 (5-159)||(36189216-36189376)
chr8 (21-159)||(31318805-31318950)
chr8 (12-156)||(18184556-18184707)
chr8 (5-156)||(12665347-12665507)
chr8 (11-155)||(10203668-10203820)
chr8 (34-153)||(33726017-33726144)
chr8 (11-155)||(43186031-43186182)
chr8 (82-138)||(42668895-42668951)
chr8 (82-154)||(31561-31633)
chr8 (95-154)||(3690729-3690788)
[»] chr2 (11 HSPs)
chr2 (5-159)||(33732569-33732730)
chr2 (5-159)||(16089822-16089982)
chr2 (5-156)||(44958116-44958275)
chr2 (5-159)||(14572995-14573157)
chr2 (5-159)||(3830927-3831086)
chr2 (5-159)||(36315561-36315722)
chr2 (5-159)||(37498892-37499056)
chr2 (35-159)||(6376298-6376424)
chr2 (5-159)||(37914267-37914427)
chr2 (34-159)||(24137151-24137287)
chr2 (37-76)||(41188859-41188898)
[»] chr3 (21 HSPs)
chr3 (11-159)||(34749933-34750089)
chr3 (5-159)||(21559561-21559723)
chr3 (11-160)||(22894679-22894836)
chr3 (21-155)||(46111990-46112131)
chr3 (35-164)||(43999984-44000120)
chr3 (12-159)||(36749406-36749561)
chr3 (12-159)||(36370374-36370529)
chr3 (5-159)||(51339813-51339972)
chr3 (5-159)||(30735525-30735686)
chr3 (12-156)||(48200688-48200840)
chr3 (82-159)||(38231293-38231370)
chr3 (82-159)||(29460660-29460737)
chr3 (82-159)||(29471512-29471589)
chr3 (5-151)||(20856184-20856334)
chr3 (14-159)||(39072317-39072464)
chr3 (34-137)||(53638157-53638267)
chr3 (5-74)||(29472901-29472970)
chr3 (37-159)||(50966131-50966256)
chr3 (37-159)||(51069266-51069391)
chr3 (14-159)||(39467140-39467292)
chr3 (97-152)||(29820428-29820483)
[»] chr6 (6 HSPs)
chr6 (12-159)||(3986942-3987096)
chr6 (11-159)||(3118082-3118238)
chr6 (10-159)||(13697569-13697724)
chr6 (14-159)||(14022934-14023086)
chr6 (17-159)||(24208444-24208593)
chr6 (11-159)||(15345695-15345848)
[»] chr1 (8 HSPs)
chr1 (5-159)||(39249892-39250054)
chr1 (5-161)||(34307167-34307331)
chr1 (5-155)||(2509028-2509186)
chr1 (11-159)||(46901770-46901926)
chr1 (14-159)||(19258711-19258863)
chr1 (82-154)||(10146971-10147043)
chr1 (37-159)||(28647353-28647482)
chr1 (82-155)||(29099821-29099893)
[»] scaffold0062 (1 HSPs)
scaffold0062 (11-155)||(6722-6874)
[»] chr7 (24 HSPs)
chr7 (11-159)||(26972238-26972394)
chr7 (37-153)||(31148296-31148419)
chr7 (5-159)||(36346594-36346755)
chr7 (11-159)||(30887700-30887855)
chr7 (5-159)||(28307524-28307686)
chr7 (5-159)||(42220992-42221154)
chr7 (11-159)||(34108426-34108582)
chr7 (12-159)||(45782696-45782851)
chr7 (24-159)||(7699932-7700074)
chr7 (24-159)||(7700130-7700272)
chr7 (24-159)||(7700328-7700470)
chr7 (24-159)||(7700526-7700668)
chr7 (5-156)||(34828069-34828226)
chr7 (14-161)||(5811202-5811356)
chr7 (35-153)||(23980137-23980262)
chr7 (14-159)||(13108148-13108299)
chr7 (17-155)||(21807364-21807509)
chr7 (34-141)||(36957447-36957561)
chr7 (82-154)||(38321014-38321086)
chr7 (37-159)||(15020282-15020408)
chr7 (37-124)||(20086690-20086784)
chr7 (94-125)||(29953661-29953692)
chr7 (34-81)||(46475109-46475156)
chr7 (23-68)||(29953620-29953665)
[»] chr5 (17 HSPs)
chr5 (14-159)||(1815655-1815807)
chr5 (11-159)||(39370927-39371083)
chr5 (5-159)||(40887971-40888133)
chr5 (11-159)||(2237276-2237432)
chr5 (11-159)||(13347128-13347284)
chr5 (11-159)||(9408074-9408230)
chr5 (11-148)||(14831555-14831700)
chr5 (5-159)||(27553403-27553564)
chr5 (82-161)||(33404550-33404629)
chr5 (34-159)||(17225319-17225449)
chr5 (5-122)||(31800595-31800719)
chr5 (82-159)||(19596181-19596258)
chr5 (14-159)||(4300582-4300734)
chr5 (35-155)||(19124532-19124657)
chr5 (40-150)||(41003915-41004031)
chr5 (5-81)||(42683684-42683761)
chr5 (82-156)||(12164254-12164328)
[»] chr4 (13 HSPs)
chr4 (11-159)||(3672274-3672430)
chr4 (11-159)||(28093131-28093287)
chr4 (5-159)||(49243815-49243976)
chr4 (11-159)||(6112630-6112785)
chr4 (5-159)||(7217765-7217927)
chr4 (12-159)||(21390992-21391146)
chr4 (5-159)||(44275706-44275867)
chr4 (5-159)||(35544912-35545074)
chr4 (5-159)||(46192359-46192520)
chr4 (34-159)||(45829316-45829448)
chr4 (37-154)||(51038768-51038893)
chr4 (113-155)||(43245522-43245564)
chr4 (82-159)||(52191314-52191391)
[»] scaffold0043 (1 HSPs)
scaffold0043 (12-155)||(87199-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (94-132)||(5943-5981)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 9e-50; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 30432500 - 30432339
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||    
T  30432500 acacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgt 30432401  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  30432400 cacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 44081936 - 44081781
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||| ||||||||||||       ||||||| |||||||| ||||    
T  44081936 cttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaa 44081837  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44081836 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 42162753 - 42162598
Alignment:
Q  12 ttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||  |||||||||||||    
T  42162753 ttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaa 42162654  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42162653 tgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 36189376 - 36189216
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||||||||||||||||| || | ||  |||||||||| |||||||| ||||||||||||| | ||||||||||||       | ||||| ||||||||    
T  36189376 acaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgt 36189278  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36189277 cacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 31318950 - 31318805
Alignment:
Q  21 ccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtggg 113  Q
    |||||||||||  | |||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||||||||||||     
T  31318950 ccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgga 31318851  T
Q  114 tgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||| | | ||||||||||||| ||||||||||||||||||||    
T  31318850 tgtaaaaagttatatgccacctaaggtggttcatgtataagagctc 31318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 18184707 - 18184556
Alignment:
Q  12 ttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaat 104  Q
    ||||||||||| ||||| ||  ||||||||||||||||||| ||||||||||||||| ||||||||||||       |||||| ||||||||||||||||    
T  18184707 ttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaat 18184608  T
Q  105 gtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
     ||||||| |||||||||||||||| ||| |||| |||||||| ||||||||    
T  18184607 atgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 12665507 - 12665347
Alignment:
Q  5 acaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttc-atctctt-------tgtttttaccacgt 95  Q
    ||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| ||||  |||||||       ||||||| |||| |    
T  12665507 acacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacat 12665408  T
Q  96 gtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
    || ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  12665407 gttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 10203820 - 10203668
Alignment:
Q  11 cttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||| ||||||||  || |||||||||||||||| ||||||||| ||||| ||||||||||||       | |||||  ||||||||||||    
T  10203820 cttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaa 10203721  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    |||||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  10203720 atgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 33726144 - 33726017
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtg 125  Q
    ||||||||||||||||| |||||| ||| ||| ||| ||||||||||||       ||||||| |||| |||||||||||| ||||||||||||| ||||    
T  33726144 gggtattttagtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtg 33726045  T
Q  126 tatgccacctaagatggttcatgtataa 153  Q
    ||||||||||||  ||||| ||||||||    
T  33726044 tatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 43186182 - 43186031
Alignment:
Q  11 cttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||||||||||| |||||||  ||| |||| |||||||||| ||||||||||||||  ||||||||| ||       ||||||| |||| | |||||||    
T  43186182 cttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaa 43186083  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    ||||||  |||||||||| || ||||||||||||  ||||| ||||||||||    
T  43186082 tgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 42668895 - 42668951
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 138  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  42668895 tgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 31561 - 31633
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 154  Q
    ||||||| |||| |||||||| ||| ||||||||| |||| |||||||| |||||||||||| ||| ||||||    
T  31561 tgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 3690729 - 3690788
Alignment:
Q  95 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 154  Q
    |||||||| ||||||||| | | ||||| |||||| ||||||||||| ||||||||||||    
T  3690729 tgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 9e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 33732730 - 33732569
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||       ||||||| |||| |||    
T  33732730 acacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgt 33732631  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33732630 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 16089982 - 16089822
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||  |||| |||||||       ||||||| ||||||||    
T  16089982 acacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-atctcttctttcaatgtttttgccacgtgt 16089884  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16089883 cacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctc 16089822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 44958275 - 44958116
Alignment:
Q  5 acaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||| |||| ||||| ||  ||||||||||||||||||||||||||||||||||| |||| |||||||       ||||||| |||| ||    
T  44958275 acacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatg 44958176  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44958175 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 14573157 - 14572995
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||||       ||||||| | |||||    
T  14573157 acacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtg 14573058  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  14573057 tcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctc 14572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 3830927 - 3831086
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||||| ||  |||||| ||||||||||||||||| || ||||||  ||||||||||||       ||||||| ||||||||    
T  3830927 acacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgt 3831026  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3831027 cacaaatgtg--tgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctc 3831086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 36315722 - 36315561
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||| ||||| |   |||||||||| | |||| |||||| || ||||||  |||| |||||||       ||||||| |||| |||    
T  36315722 acacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgt 36315623  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36315622 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 37498892 - 37499056
Alignment:
Q  5 acaccacttatgtaca-ccccatgtattctgggtattttagtaattttacatcatatcatcaccca--ttttcatctctt-------tgtttttaccacg 94  Q
    ||||| |||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||   ||||||||||||       ||||||| ||||     
T  37498892 acacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccaca 37498991  T
Q  95 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||| |||||||||| |||||||||  |||||||||| || |||||||||||    
T  37498992 tgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctc 37499056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 6376298 - 6376424
Alignment:
Q  35 ggtattttagtaattttacatcatatcatcacccattttcatctctttgttt--ttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 132  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||||  ||   |  |||| ||||||||||||||||||||||||||||||||||||||    
T  6376298 ggtattttagtaatttcacatcacatcctcacccattttcatctcttctttcaatggccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 6376397  T
Q  133 cctaagatggttcatgtataagagctc 159  Q
    |||| | ||||| |||||||| |||||    
T  6376398 cctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 37914267 - 37914427
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||||||  | |||||||||| | |||| |||||| || ||||||| |||| |||||||       ||||||| |||| |||    
T  37914267 acacctcttatgtacaccccatgtac-cagggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgt 37914365  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37914366 cacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctc 37914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 24137151 - 24137287
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggt----gtaaaagg 122  Q
    ||||||||||||||||| |||||| ||| ||| || ||||||||||||       |||||||  ||| ||||||||||||||||||||    || |||||    
T  24137151 gggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagg 24137250  T
Q  123 gtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||| ||||||||| ||||| |||||||| |||||    
T  24137251 gtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 41188898 - 41188859
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcat 76  Q
    ||||||||||||||||||||| ||||||| || |||||||    
T  41188898 tattttagtaattttacatcacatcatcatcccttttcat 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 9e-47; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 34749933 - 34750089
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  34749933 cttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa 34750032  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34750033 atatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 21559723 - 21559561
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||||||||| |||| ||  |||||||||||||||||||||||||||||| |||| ||||||||||||       | ||||| |||||||    
T  21559723 acacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtg 21559624  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21559623 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 21559561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 22894836 - 22894679
Alignment:
Q  11 cttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||| || ||||||||||||       ||||||| |||||||||||||    
T  22894836 cttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaa 22894737  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcc 160  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22894736 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcc 22894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 46111990 - 46112131
Alignment:
Q  21 ccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtggg 113  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| |||| ||||||||||||||||||     
T  46111990 ccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgga 46112089  T
Q  114 tgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  46112090 tgtaaaatggtgtatgtcacctaagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 44000120 - 43999984
Alignment:
Q  35 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 127  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  44000120 ggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 44000021  T
Q  128 tgccacctaagatggttcatgtataagagctccattc 164  Q
    || |||||||| |||||||||||||||||||| ||||    
T  44000020 tgacacctaaggtggttcatgtataagagctctattc 43999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 36749561 - 36749406
Alignment:
Q  12 ttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    |||||||||||| ||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||||||||    
T  36749561 ttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaa 36749462  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  36749461 tgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctc 36749406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 36370374 - 36370529
Alignment:
Q  12 ttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||  ||| |||||||||    
T  36370374 ttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaa 36370473  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36370474 tgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctc 36370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 51339813 - 51339972
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||  ||||| ||   |||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||    
T  51339813 acacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgt 51339912  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||  ||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  51339913 cacaaatgtg--tgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctc 51339972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 30735525 - 30735686
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttc-atct-cttt----gtttttaccacgtgt 97  Q
    ||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| ||||  |||| ||||    |||||| ||||||||    
T  30735525 acaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttttatatcttctttcaatgtttttgccacgtgt 30735624  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  30735625 cacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctc 30735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 48200840 - 48200688
Alignment:
Q  12 ttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||       | ||||| ||||||||||||||    
T  48200840 ttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatatttttgccacgtgtcacaaa 48200741  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
    | | ||||| ||||||| |||||||||||||||||||| |||||| |||||||    
T  48200740 tatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 38231370 - 38231293
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38231370 tgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 29460737 - 29460660
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29460737 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 29471589 - 29471512
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29471589 tgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 20856184 - 20856334
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc-atctcttt----gtttttaccacgtgtca 99  Q
    ||||| || ||||||||||||||| |   |||||||| |||||||||| |||| ||||||| || ||||  |||| |||    |||||| |||| |||||    
T  20856184 acacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatcctttttatatctttttcaatgtttttgccacatgtca 20856282  T
Q  100 caaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 151  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  20856283 caaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 39072317 - 39072464
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    ||||||||||||||| |   ||||||||||||||     ||||| |||||||||||||||||||||||       ||||| | |||| ||||||||||||    
T  39072317 atgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgt 39072411  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
     |||||||||||||||||||||| || ||||| || ||||||||||| |||||    
T  39072412 atgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctc 39072464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 53638267 - 53638157
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 126  Q
    ||||||||||| |||||||||||| ||||||||||  | |||||||||       |||||||||||| |||||| | ||||||||||||| |||||||||    
T  53638267 gggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgt 53638168  T
Q  127 atgccacctaa 137  Q
    |||||||||||    
T  53638167 atgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29472970 - 29472901
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttc 74  Q
    |||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  29472970 acaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 50966256 - 50966131
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 129  Q
    ||||||||||||||||||| ||||||||   | ||||||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  130 ccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||| ||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctc 50966131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 51069391 - 51069266
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 129  Q
    ||||||||||||||||||| ||||||||   | ||||||||||||       | |||||  |||||||||||||||||  | | ||||||||||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  130 ccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||| ||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctc 51069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 39467140 - 39467292
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    ||||||||| ||||| || ||| |||||||||||||| | |||| ||| |||||| ||||||||||||       | |||||  ||| |||||||||| |    
T  39467140 atgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatat 39467239  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||| || ||| | ||||| ||| |||| |||||    
T  39467240 gtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctc 39467292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 29820428 - 29820483
Alignment:
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtata 152  Q
    |||||| ||| ||||||||| |||| |||||||||||||||| ||||  |||||||    
T  29820428 tcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 3986942 - 3987096
Alignment:
Q  12 ttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaat 104  Q
    ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || ||||||||||||       ||||||| |||||||||||||||    
T  3986942 ttatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaat 3987041  T
Q  105 gtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3987042 gtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 3118082 - 3118238
Alignment:
Q  11 cttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||| |||| |||| ||       ||||||| |||||||||||||    
T  3118082 cttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaa 3118181  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  3118182 atgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctc 3118238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 13697724 - 13697569
Alignment:
Q  10 acttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||||||||| ||   | |||||||||||||||| ||||||||||||||| ||||||||||||       |||||||||||||| ||||||    
T  13697724 acttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccacgtatcacaa 13697625  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||| ||| |||||||||||| ||| || ||||||||||| ||||||||||||||    
T  13697624 atgtgtatgg-tgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 14023086 - 14022934
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| || |||||||||       ||||||| |||| ||||||||||||    
T  14023086 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgt 14022987  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  14022986 gtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 24208593 - 24208444
Alignment:
Q  17 tacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtg 109  Q
    |||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| | |||||||||||||    
T  24208593 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtg 24208494  T
Q  110 tgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||  |||||| ||||||| ||||||| |||||||| |||||    
T  24208493 tgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 15345695 - 15345848
Alignment:
Q  11 cttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||||||||||| |||||||  ||| |||| |||||||| | ||||||||||||||  ||||||||| ||       ||||||| ||||||||||||||    
T  15345695 cttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaa 15345794  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||| ||  |||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  15345795 tgtatg--ggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctc 15345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 1e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 39249892 - 39250054
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||||||||| |||||||  |||||||||||||||||||||| |||||| || || ||||||||||||       ||||||| |||||||    
T  39249892 acacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtg 39249991  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39249992 tcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 39250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 34307167 - 34307331
Alignment:
Q  5 acaccacttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| ||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||| ||||       ||||||| |||||||    
T  34307167 acacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgccacgtg 34307266  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 161  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34307267 tcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctcca 34307331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 2509186 - 2509028
Alignment:
Q  5 acaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||| ||||| ||||||||||||       ||||||| |||||||    
T  2509186 acacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtg 2509087  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  2509086 tcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 46901770 - 46901926
Alignment:
Q  11 cttatgtacacc-ccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||| ||||||||   | |||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  46901770 cttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaa 46901869  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    || ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  46901870 atatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 19258711 - 19258863
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctcttt-------gtttttaccacgtgtcacaaatgt 106  Q
    ||||||||||||||| ||  |  ||||||| |||||| |||||| |||| ||||| |||||||||||||       |||||| |||| |||||||||| |    
T  19258711 atgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatat 19258810  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
     ||||||||||||| |||||||||||||| |||||||| |||||||| |||||    
T  19258811 atgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctc 19258863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 10147043 - 10146971
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 154  Q
    ||||||| |||| |||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  10147043 tgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 28647482 - 28647353
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 129  Q
    ||||||| |||||| |||||| |||| ||||| ||||||||| ||       ||||||| |||  | |||||||| ||||||||||||||| | ||||||    
T  28647482 tattttaataatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatg 28647383  T
Q  130 ccacctaagatggttcatgtataagagctc 159  Q
    | |||| || |||||||||||||| |||||    
T  28647382 caaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 29099893 - 29099821
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    |||||||  ||| ||||||||||||||||||  || |||| |||||||||| ||||| ||||| ||||||||||    
T  29099893 tgtttttgtcacatgtcacaaatgtgtgtggacgt-aaagagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 6874 - 6722
Alignment:
Q  11 cttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||| ||||||||  || ||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  6874 cttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa 6775  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6774 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 2e-44; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 26972238 - 26972394
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| |||||||||||        ||||||| |||||||||| ||    
T  26972238 cttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataa 26972337  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26972338 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 26972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 31148419 - 31148296
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  31148419 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 31148320  T
Q  130 ccacctaagatggttcatgtataa 153  Q
    ||||||||||||||||||||||||    
T  31148319 ccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 36346594 - 36346755
Alignment:
Q  5 acaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| ||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||  ||||||||||||       ||||||| |||||||    
T  36346594 acacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-ttttcatctcttctttcaatgtttttgccacgtg 36346692  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36346693 tcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctc 36346755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 30887855 - 30887700
Alignment:
Q  11 cttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||| |||||||||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| | ||||||||||||    
T  30887855 cttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaa 30887756  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30887755 tgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 28307524 - 28307686
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||||||||| || | ||  ||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||    
T  28307524 acacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtg 28307623  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    || ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28307624 tcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 42220992 - 42221154
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||||||||||||||| |||||| ||  ||||||||| |||||||| ||||||||||||||||| |||| || ||||       ||||||| |||||||    
T  42220992 acaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtg 42221091  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  42221092 tcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 34108582 - 34108426
Alignment:
Q  11 cttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||| ||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||  ||  ||||||||    
T  34108582 cttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaa 34108483  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    || |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34108482 atatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 45782696 - 45782851
Alignment:
Q  12 ttatgtacac-cccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||  |||||||||||||    
T  45782696 ttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaa 45782795  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||    
T  45782796 tgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7699932 - 7700074
Alignment:
Q  24 catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgt 116  Q
    ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       ||||||| |||||||||||||||||||||||||||    
T  7699932 catgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 7700031  T
Q  117 aaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700032 aaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7700130 - 7700272
Alignment:
Q  24 catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgt 116  Q
    ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       ||||||| |||||||||||||||||||||||||||    
T  7700130 catgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 7700229  T
Q  117 aaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700230 aaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7700328 - 7700470
Alignment:
Q  24 catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgt 116  Q
    ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       ||||||| |||||||||||||||||||||||||||    
T  7700328 catgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 7700427  T
Q  117 aaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700428 aaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 7700526 - 7700668
Alignment:
Q  24 catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgt 116  Q
    ||||| || |||||||||||||||||||| |||||||||||| || |||| |||||||       ||||||| |||||||||||||||||||||||||||    
T  7700526 catgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 7700625  T
Q  117 aaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  7700626 aaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 34828226 - 34828069
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    |||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||| |  ||||||||||||       ||||||| ||||||||    
T  34828226 acaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgt 34828127  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
    ||||||||||||||| ||||||||| |||||| |||| ||| |||||||||||||||||    
T  34828126 cacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 5811202 - 5811356
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| ||||||||||||    
T  5811202 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgt 5811301  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 161  Q
    ||||||||| |||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5811302 gtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctcca 5811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 23980262 - 23980137
Alignment:
Q  35 ggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgta 127  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||       ||||||| |||| |||||||||||||||||||||||||||||||||    
T  23980262 ggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgta 23980163  T
Q  128 tgccacctaagatggttcatgtataa 153  Q
    ||||||||| | ||||| ||||||||    
T  23980162 tgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 13108299 - 13108148
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctcttt-------gtttttaccacgtgtcacaaatgt 106  Q
    ||||||||| ||||| ||  ||||||||||||||||| |||||| ||| |||||| ||| ||||||||        |||||| |||| ||||||||||||    
T  13108299 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-catctcttctttcaacgtttttgccacatgtcacaaatgt 13108201  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  13108200 gtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 21807364 - 21807509
Alignment:
Q  17 tacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtg 109  Q
    ||||||||| || ||  ||||||||||||||||| |||| | ||||||| |||||||||||||||       | ||||| |||| | |||||||| ||||    
T  21807364 tacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtg 21807463  T
Q  110 tgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  21807464 tgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 36957561 - 36957447
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 126  Q
    |||||||||||||||||||||| | || |||| |||||||||||||||       | |||||  |||||||||||||| ||| ||| |||||||||||||    
T  36957561 gggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgt 36957462  T
Q  127 atgccacctaagatg 141  Q
    |||||||||||||||    
T  36957461 atgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 38321086 - 38321014
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 154  Q
    ||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||||||||| |||||||||    
T  38321086 tgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 15020408 - 15020282
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 129  Q
    |||||||||||||| |||||||||| |||||| ||| | ||||||       ||||||| |||  |||||||||||||||  ||||||||||| ||||||    
T  15020408 tattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatg 15020312  T
Q  130 ccacctaagatggttcatgtataagagctc 159  Q
    ||||||| | ||||| |||||||| |||||    
T  15020311 ccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 20086690 - 20086784
Alignment:
Q  37 tattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 124  Q
    |||||||||||||| |||||| |||||||||| |||| |||||||       ||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  94 gtgtcacaaatgtgtgtgggtgtaaaagggtg 125  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 46475156 - 46475109
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt 81  Q
    ||||||||||||||||| |||||| ||| |||||| ||||||||||||    
T  46475156 gggtattttagtaatttcacatcacatcgtcaccccttttcatctctt 46475109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 29953620 - 29953665
Alignment:
Q  23 ccatgtattctgggtattttagtaattttacatcatatcatcaccc 68  Q
    |||||||||  || ||||| ||||||||||||||||||||||||||    
T  29953620 ccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 2e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 1815655 - 1815807
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    |||||||||| |||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||| ||||||||||||||| |    
T  1815655 atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatat 1815754  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1815755 gtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctc 1815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 39371083 - 39370927
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       |||||||  ||||||||||||    
T  39371083 cttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaa 39370984  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39370983 atgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 40887971 - 40888133
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| |||||||||||||| || ||||   |||||||||||||||||||||||||||| ||||| ||||||||||||       ||||||| |||||||    
T  40887971 acacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtg 40888070  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  40888071 tcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctc 40888133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 2237432 - 2237276
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| | |||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  2237432 cttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa 2237333  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    || |||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  2237332 atatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 13347284 - 13347128
Alignment:
Q  11 cttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||| | ||||||||| ||       ||||||| |||||||||||||    
T  13347284 cttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgccacgtgtcacaa 13347185  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13347184 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctc 13347128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 9408074 - 9408230
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| || ||||  |||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  9408074 cttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa 9408173  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  9408174 atgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctc 9408230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 14831700 - 14831555
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| | |||||  |||||||| | |||||||||||||||||||||||| ||||||||||||       ||||||| |||||| ||||||    
T  14831700 cttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaa 14831601  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatg 148  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  14831600 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 27553403 - 27553564
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| ||||||||||||| |||| ||  | |||||||||||||||||||||| || ||||||  ||||| ||||||       ||||||| ||||||||    
T  27553403 acacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccacgtgt 27553502  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  27553503 cacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctc 27553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 33404550 - 33404629
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcca 161  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  33404550 tgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctcca 33404629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 17225449 - 17225319
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 126  Q
    ||||||||||||||||| |||||| |||||||||  ||||||||||||       |||||||  ||| ||||||||||||||||||||||||||  | ||    
T  17225449 gggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagt 17225352  T
Q  127 atgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||  ||||||||||||||||||||    
T  17225351 atgccacctaaagtggttcatgtataagagctc 17225319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 31800719 - 31800595
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| ||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| ||||||||| ||       | ||||| ||||||||    
T  31800719 acacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgt 31800620  T
Q  98 cacaaatgtgtgtgggtgtaaaagg 122  Q
    || ||||||||||||||||||||||    
T  31800619 cataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 19596181 - 19596258
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  19596181 tgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 4300582 - 4300734
Alignment:
Q  14 atgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgt 106  Q
    ||||||||| ||||| ||  || ||||||| |||||| |||||| |||| ||||  |||| |||||||       ||||||| |||  |||||||||| |    
T  4300582 atgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatat 4300681  T
Q  107 gtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  4300682 gtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctc 4300734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 19124532 - 19124657
Alignment:
Q  35 ggtattttagtaattttacatcatatcatcacccattttcatctctt------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 128  Q
    ||||||||||||||||||||||||||||||||    |||||||||||      ||||||| ||||  ||||||| ||||||||||||| |||  ||||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttctttaatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtat 19124630  T
Q  129 gccacctaagatggttcatgtataaga 155  Q
    |||| ||||||| || |||||||||||    
T  19124631 gccatctaagatagtccatgtataaga 19124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  40 tttagtaattttacatcatatcatcacccattttcatctctttgt------ttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccac 133  Q
    |||||||||||||||||| ||||||| || |||| || ||||| |      |||| |||| ||||| |||||||| || |||||||||||||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccac 41004014  T
Q  134 ctaagatggttcatgta 150  Q
    ||||  |||||||||||    
T  41004015 ctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 42683761 - 42683684
Alignment:
Q  5 acaccacttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt 81  Q
    ||||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||| || || ||||||||||||    
T  42683761 acacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttcatctctt 42683684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 12164328 - 12164254
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagag 156  Q
    ||||||| |||| || ||||| |||||||| || | ||||  ||| |||||||||||||||||||||||||||||    
T  12164328 tgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 2e-44; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 3672430 - 3672274
Alignment:
Q  11 cttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||| ||||||||  |||||||| ||||||| |||||||||||||||||| ||||||||||||       ||||||| |||||||||||||    
T  3672430 cttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa 3672331  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3672330 atgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 28093131 - 28093287
Alignment:
Q  11 cttatgtacacccc-atgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||||||||||||| |||||||||||        ||||||| |||||||||||||    
T  28093131 cttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaa 28093230  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28093231 atgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 28093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 49243976 - 49243815
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||   |||| |||||||       ||||||| |||| |||    
T  49243976 acacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgt 49243877  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49243876 cacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 6112785 - 6112630
Alignment:
Q  11 cttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaa 103  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| || ||||||||||||       ||||||| ||||||||||||||    
T  6112785 cttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaa 6112686  T
Q  104 tgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    | ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6112685 tatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctc 6112630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 7217927 - 7217765
Alignment:
Q  5 acaccacttatgtacaccc-catgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||| ||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||| |||| |||||||       ||||||| |||||||    
T  7217927 acacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtg 7217828  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  7217827 tcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctc 7217765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 21390992 - 21391146
Alignment:
Q  12 ttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaat 104  Q
    ||||||||||| ||||| ||  |||||||||||||||||||||||||||  |||| ||||||||||||||       | ||||| |||||||||||||||    
T  21390992 ttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccacgtgtcacaaat 21391091  T
Q  105 gtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  21391092 gtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 21391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 44275867 - 44275706
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| |||| |||||||       | |||||  |||||||    
T  44275867 acacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcacgtgt 44275768  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  44275767 cacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctc 44275706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 35545074 - 35544912
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtatttt-agtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtg 96  Q
    ||||||||||||||||| |||||| ||  ||||||||| |||||||||||||||||||||||||| |||| || ||||       ||||||| ||||||     
T  35545074 acaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgta 35544975  T
Q  97 tcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  35544974 tcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctc 35544912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 46192520 - 46192359
Alignment:
Q  5 acaccacttatgtacaccccatgtattctgggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgt 97  Q
    ||||| |||||||||||||||||||    |||||||||| | |||| |||||| || ||||||| |||| |||||||       ||||||| |||| |||    
T  46192520 acacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgt 46192421  T
Q  98 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46192420 cacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctc 46192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 45829316 - 45829448
Alignment:
Q  34 gggtattttagtaattttacatcatatcatcacccattttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgt 126  Q
    |||||||||| | |||| |||||| || ||||||| |||| |||||||       ||||||| |||| |||||||||||||||||||||||||| |||||    
T  45829316 gggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgt 45829415  T
Q  127 atgccacctaagatggttcatgtataagagctc 159  Q
    ||| |||||||  ||||||||||||||||||||    
T  45829416 atgtcacctaaagtggttcatgtataagagctc 45829448  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  37 tattttagtaattttacatcatatcatcaccca-ttttcatctctt-------tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 128  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||       |||||||  ||| |||||||| ||||||||||||| ||||  |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  129 gccacctaagatggttcatgtataag 154  Q
    |||||||||| |||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  113 gtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 52191314 - 52191391
Alignment:
Q  82 tgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 159  Q
    |||||||  ||| |||||||| | ||||||| ||| ||| ||| ||||||||||||| |||| |||||||||| ||||    
T  52191314 tgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctc 52191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 87199 - 87350
Alignment:
Q  12 ttatgtacaccccatgtattctgggtattttagtaattttacatcatat--catcacccattttcatctctt-------tgtttttaccacgtgtcacaa 102  Q
    ||||||||||||||||| ||  ||||||||||||||||||| || ||||  ||||||   ||||||||||||       ||||||| |||||||||||||    
T  87199 ttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttcatctcttctttcaatgtttttgccacgtgtcacaa 87298  T
Q  103 atgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 155  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  87299 atgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  94 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 132  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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