View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-2 (Length: 999)
Name: NF4415-Insertion-2
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 501 - 966
Target Start/End: Original strand, 41323769 - 41324233
Alignment:
| Q |
501 |
cttcaacgaacaatttagacattagagagtgaatataccgtgtatctttttggttcatcaccgttagtatgatctacgaaactccaatcaggaacgtaga |
600 |
Q |
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| T |
41323769 |
cttcaactaacaatttagacattggagagtgaatataccgtgtatctttttggttcgtcaccgttagtatgatctacgaaactccaatcaggaacgtaga |
41323868 |
T |
|
| Q |
601 |
gggtgaaagttgtgaacatgtaaatgagaaatgccaaaaagcctccaaacctagctcatgtatattattgtacattagtaaatgaaagttcagaatttca |
700 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41323869 |
gggtgaaagttgtgatcatgtaaatgagaaatgccaaaaagcctccaaacctagctcatgtatattattgtacattagtaaatgaaagttcagactttca |
41323968 |
T |
|
| Q |
701 |
attagtatatttgaaatttgaaattaaatgagtgttgtgttatctcaccattgccatttataggcagtgaaaatggctatgcgtccagacctcaaggtag |
800 |
Q |
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| T |
41323969 |
attagtatatttgaaatttgaaattaaatgagtgttgtgttatctcaccattgccatttataggcagtgaaaatggctatgcgtccaggcctcaaggtag |
41324068 |
T |
|
| Q |
801 |
cgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacac-aattcaaaaatgtggtcaatcaaaa |
899 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41324069 |
tgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacacaaattcaaaaatgtggtcaatcaaaa |
41324168 |
T |
|
| Q |
900 |
ctgcgttc-aatgtgattatttttgcattagggcttcgcgtaacatttttcaatttcgtttgattttt |
966 |
Q |
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| T |
41324169 |
ctgcgttcaaatgtgatta-ttttgcatta-ggcctcgcgtaacatttttcaa-ttcgtttgattttt |
41324233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 250 - 459
Target Start/End: Original strand, 41323518 - 41323727
Alignment:
| Q |
250 |
gtcagtcgaatttacaacactcacacaccaaccaattgcgctagatttcaactgctattatgtaataaaagttacaagtcgttactagttaccttcaagt |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41323518 |
gtcagtcgaatttacaacactcacacaccaaccaattgcgctagatctcaactgctattatgtaataaaagttacaattcgttactagttaccttcaagt |
41323617 |
T |
|
| Q |
350 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41323618 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
41323717 |
T |
|
| Q |
450 |
acatatcacc |
459 |
Q |
| |
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|||||||||| |
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| T |
41323718 |
acatatcacc |
41323727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 41323276 - 41323457
Alignment:
| Q |
8 |
gaaggcaaacctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcacctggagaactgaatgtgcat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41323276 |
gaaggcaaacctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcgcctggagaactgaatgtgcat |
41323375 |
T |
|
| Q |
108 |
tcctataaaagaaatatacgaaatatctttagaaggaaaactgcagggtatttttgccaaattcatttagaacaattaatac |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41323376 |
tcctataaaagaaatatacgaaatatctttagaaggaaaactgcagggtatttttgccgaattcatttagaacaattaatac |
41323457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 536 - 878
Target Start/End: Original strand, 41309186 - 41309539
Alignment:
| Q |
536 |
taccgtgtatctttttggttcatcaccgttagtatgatctacgaaactccaatcaggaacgtagagggtgaaagttgtgaacatgtaaatgagaaatgcc |
635 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||| |||||||||| |||||| || | | || ||||||| ||||||||||||||||||| |
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| T |
41309186 |
taccgtgtatctctttggttcatcattgttaacatgatctacaaaactccaattaggaacatacaaagcaaaggttgtgatcatgtaaatgagaaatgcc |
41309285 |
T |
|
| Q |
636 |
aaaaagcctccaaacctagctca----tgtatattattgtacattagtaaatgaaag----ttcagaatttcaattagtatatttgaaatttgaaattaa |
727 |
Q |
| |
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| ||||||||||||||| ||| |||||||| | |||||||| | |||| ||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
41309286 |
atgaagcctccaaacctaagtcagacatgtatattgt-gtacattaatcaatggaaggaagttcacaatttcaattagcatatttgaaatttgaaattaa |
41309384 |
T |
|
| Q |
728 |
atgagtgttgtgttatc----tcaccattgccatttataggcagtgaaaatggctatgcgtccagacctcaaggtagcgggtctaagcttggtggtaaat |
823 |
Q |
| |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
41309385 |
atgtgtgttgtgttatctatctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagcttggtggtaaat |
41309484 |
T |
|
| Q |
824 |
gtctctattagagccacaatacaatatactagtgctattctctgcacacacaatt |
878 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |
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| T |
41309485 |
gtctctattagagccacaatacaatatacaagggctattctctgcacacaaaatt |
41309539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 41308730 - 41308826
Alignment:
| Q |
16 |
acctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcacctggagaactgaatgtgcattccta |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||||||||| || |||| |||||| |||| ||| ||||| ||||||||| |||| |
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| T |
41308730 |
acctcaataagccctctggttcaaatggagcaagacaccagcttggagcatcatcacgaaatggaccctcacttggggaactaaatgtgcatgccta |
41308826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 350 - 459
Target Start/End: Original strand, 41308995 - 41309104
Alignment:
| Q |
350 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
449 |
Q |
| |
|
||||||||||||| || ||||| || |||||||||||| ||| ||||| |||||||||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
41308995 |
gtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgccctctcatccc |
41309094 |
T |
|
| Q |
450 |
acatatcacc |
459 |
Q |
| |
|
|||||||||| |
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|
| T |
41309095 |
acatatcacc |
41309104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 743 - 869
Target Start/End: Complemental strand, 27657618 - 27657492
Alignment:
| Q |
743 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccagacctcaaggtagcgggtctaagcttggtggtaaatgtctctattagagccacaa |
842 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||| || | ||||| |||||||| | ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
27657618 |
tctcaccattgccatctatagctagtaaaaatggataggtatccaggactcaaggttgtaggtctaagcttagtggtaaatgtctctattagagctacaa |
27657519 |
T |
|
| Q |
843 |
tacaatatactagtgctattctctgca |
869 |
Q |
| |
|
| |||||||| || ||||| ||||||| |
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|
| T |
27657518 |
tgcaatatacaagagctatcctctgca |
27657492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 27658015 - 27657940
Alignment:
| Q |
379 |
ttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatcccacata |
454 |
Q |
| |
|
||||||||||| | ||| ||||| ||||| |||||||||||||||||||| ||| ||||||||| |||||||||| |
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|
| T |
27658015 |
ttaaccccccacatttgtctatccacatacccaacagcgttacatgcaggacctaagtgtcctctaatcccacata |
27657940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 579 - 653
Target Start/End: Complemental strand, 27657822 - 27657748
Alignment:
| Q |
579 |
aaactccaatcaggaacgtagagggtgaaagttgtgaacatgtaaatgagaaatgccaaaaagcctccaaaccta |
653 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||| ||||||||| | |||||||| ||| ||||||| |||| |
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|
| T |
27657822 |
aaactccaatctggaacgtagaggctgaaagtagtgaccatgtaaataacaaatgccacaaaccctccaagccta |
27657748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 27658411 - 27658321
Alignment:
| Q |
16 |
acctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcacctggagaactgaatgtgca |
106 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||||||||| |||| ||||| | |||| ||||| ||| ||||||||||||||||||| |
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|
| T |
27658411 |
acctcaaaaaaccctcaggttcaaaaggagcacgacaccatgttggtgcatccttacgaagaggaccatcagctggagaactgaatgtgca |
27658321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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