View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-4 (Length: 791)
Name: NF4415-Insertion-4
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 289 - 791
Target Start/End: Complemental strand, 5934594 - 5934090
Alignment:
| Q |
289 |
gaacggaaagaagtacccatcttttcgttagtattaaataaagaagttgggagttcaaacctaaaatctccattagcggtgtctcacaccaatgacatga |
388 |
Q |
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| T |
5934594 |
gaacggaaagaagtacccatcttttcattagtattaaataaagaagttgggagttcaaacctgaaatctccattagcggtgtctcacaccaatgacatga |
5934495 |
T |
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| Q |
389 |
ttnnnnnnnnntta--atttgtttgttggtgtatacatgctgtgttggcaactgagtttgcatatttgtaagcagagcaagnnnnnnnnnnnnnnnnn-- |
484 |
Q |
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| T |
5934494 |
ttaaaaaaaaataatcatttgtttgttggtgtatacatgttgtgttggcaactgagtttgcatatttgtaagcagagcaagttttttttttttttttttt |
5934395 |
T |
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| Q |
485 |
-acaatacagaagaattgatatattagttgaagggttgacacaccattcttttagaagacaatgacccttacccctattgagaacccattaccaaaactt |
583 |
Q |
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| T |
5934394 |
gacaata-agaagaattgatatattagttgaaggtttgacacgccattcttttagaagacaatgacccttacccctattgagaacccattaccaaaactt |
5934296 |
T |
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| Q |
584 |
tcacttgattaatttgctctatcataccattagttcttgagctataattcttccatttaaaatattataatccattttctctagttattgtttactagga |
683 |
Q |
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| T |
5934295 |
ccacttgattaatttgctctatcatagcattagttcttgagctataattcttccatttaaaatattataatccattttctctggttaatgtttactagga |
5934196 |
T |
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| Q |
684 |
a-nnnnnnnnnnaaaccgcaaatttttattaaaaaactaggttcctgcataagacgaacagagaccgatcatccataaactacaagacagaggcaccgta |
782 |
Q |
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| T |
5934195 |
atttttttttttaaactgcaaa-ttttatt--aaaactcagtccctgcataagacgaacaaagaccgatcatccataaactacaagacagaggcatcgta |
5934099 |
T |
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| Q |
783 |
tatatgcgg |
791 |
Q |
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| T |
5934098 |
tatatgcgg |
5934090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 5934878 - 5934682
Alignment:
| Q |
8 |
catagaatgtatgaatcctatgcaagcaatggcaatgcaagatctcatacacgacaacacgagtttattttactcacaatatagcctatatgcatatgat |
107 |
Q |
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| T |
5934878 |
catagaatgtatgaatcctatgcaagcaatggcaatgcaagatctcatacacgacaacacgagtttattttactcacaatttagcctatatgcatatgat |
5934779 |
T |
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| Q |
108 |
ttcagcttttactaatgtttttatttattactagctgtcttatttgtgccattgaaaaagataaatg---ttgtgtttgttataatttagaagttac |
201 |
Q |
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| T |
5934778 |
ttcagcttttactaatgtttttatttattactggctgtcttatttgtgccattgaaaaagataaatgttgttgtgtttgttataatttagaagttac |
5934682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 706 - 771
Target Start/End: Original strand, 34576027 - 34576093
Alignment:
| Q |
706 |
ttttattaa-aaaactaggttcctgcataagacgaacagagaccgatcatccataaactacaagaca |
771 |
Q |
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| T |
34576027 |
ttttattaagaaaacttggtccctgcacaagacgaacagaaaccgataatccataaactacaagaca |
34576093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 791
Target Start/End: Complemental strand, 28171729 - 28171644
Alignment:
| Q |
706 |
ttttattaaaaaactaggttcctgcataagacgaacagagaccgatcatccataaactacaagacagaggcaccgtatatatgcgg |
791 |
Q |
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| T |
28171729 |
ttttattaaaatacttgatccctgcacaagacgaacagagaccggtcgtccaaaaactacaaaacataggtgtcgtatatatgcgg |
28171644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 791
Target Start/End: Complemental strand, 9657748 - 9657683
Alignment:
| Q |
726 |
cctgcataagacgaacagagaccgatcatccataaactacaagacagaggcaccgtatatatgcgg |
791 |
Q |
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| T |
9657748 |
cctgcacaagacgaacagagaccggtcattcagaaactacaaaacaaagacgctgtatatatgcgg |
9657683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 791
Target Start/End: Complemental strand, 13528772 - 13528707
Alignment:
| Q |
726 |
cctgcataagacgaacagagaccgatcatccataaactacaagacagaggcaccgtatatatgcgg |
791 |
Q |
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| T |
13528772 |
cctgcacaagacgaacagagaccggtcattcagaaactacaaaacaaagacgctgtatatatgcgg |
13528707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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