View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-5 (Length: 733)
Name: NF4415-Insertion-5
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 8 - 733
Target Start/End: Complemental strand, 51350908 - 51350163
Alignment:
| Q |
8 |
ccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcactaatttgcattgtttctgg |
107 |
Q |
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| T |
51350908 |
ccacctttgtagttcatgttagatcacaattcaaatggtacaaaggttttcttatatctctcttatatgcttctgctgcactaatttgcattgtttctgg |
51350809 |
T |
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| Q |
108 |
aaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctccatatgttttatatatagct |
207 |
Q |
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| T |
51350808 |
aaagagattctattgtaccccgaatccaggagggagtccattgttgggtattttacagggaccgtttcttcattcgcctccatatgttttatatatagct |
51350709 |
T |
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| Q |
208 |
attcaagttgaatgtgtgtcaggtgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttttcgaacgtgtgagagttt |
307 |
Q |
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| T |
51350708 |
attcaagttgaatgtgtgtcagatgtgttgaacaccgacatgacacatacttacattcaattttctcaaataattatcgttttcgaacgtgtgagagttt |
51350609 |
T |
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| Q |
308 |
tagtattttgacaat----------------------catatacttattattttgtaattgttcttgaaggtgctggttgtcacggtcaagaattggagg |
385 |
Q |
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| T |
51350608 |
tagtattgtgacaatgtccgtatctctgtcagtgcttcatatacttattattttgtaattgttcttgaaggtgctggttgtcacagtcaagaattggagg |
51350509 |
T |
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| Q |
386 |
gtgaaatagagtcataagtctctccaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacatt |
485 |
Q |
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| T |
51350508 |
gtgaaatagagtcataagtctcttcaatttcaattttaaattcaggttggagtaaatgtagttatttctattttatattcaataataccagtactacatt |
51350409 |
T |
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| Q |
486 |
attagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgt |
585 |
Q |
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| T |
51350408 |
attagcataccagtatagattatcacaagtggtagatatcaattaatgcagagatatcttattaattttgtttttactacaagcatcaagattctactgt |
51350309 |
T |
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| Q |
586 |
gctaaattgacaattgcagtaatatattcaccatcatcatcatgagtgcacattcgcattta-ggtgagtttgatagaatcgcggtgtgcttctgtgaat |
684 |
Q |
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| T |
51350308 |
gctaaattgacaattgcagtaatatattcacc---atcactatgagtgcacattcgcatttatggtgaatttgatagaatcgcggtgtgcttctgtgaat |
51350212 |
T |
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| Q |
685 |
ttgacagaaactatactttgcagctctaataaaatcaatgtcactgtga |
733 |
Q |
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| T |
51350211 |
ttgacagaaactatactttgcagctctaataaaatcaatgtcactgtga |
51350163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 51360227 - 51360104
Alignment:
| Q |
43 |
tggtacaaaggttttcttatatctctcttatatgcttctgctgcactaatttgcattgtttctggaaagagattctattgtaccccgaatccaggaggga |
142 |
Q |
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| T |
51360227 |
tggtacaaaggttttcttatatctctctcatgttctgcctctgcacttatttgcattgttgctggaaagagattctatcgtaaacgaattcctggggaga |
51360128 |
T |
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| Q |
143 |
gtccattgttgggtattttacagg |
166 |
Q |
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| T |
51360127 |
gtccattgttgagtattttacagg |
51360104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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