View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-7 (Length: 435)
Name: NF4415-Insertion-7
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-7 |
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| [»] scaffold0528 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: scaffold0528 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 944 - 529
Alignment:
| Q |
8 |
aaaacttatgctggtagataagctcaagccctagtgggataacttgtacaacttttcatgatttgtttcaagaaggaaaatcaaatggaaccgtaaaaac |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
944 |
aaaacttatgccggtagataagctcaagccctagtgggataacttgtacaacttttcatgatttgtttcacgaaggaaaatcaaatggaaccgtaaaaac |
845 |
T |
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| Q |
108 |
agtttggaaaaaccgaacagttcatggtttgtcctgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
207 |
Q |
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| T |
844 |
agtttgtaaaaaccgaacagttcatggtttgtcctgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
745 |
T |
|
| Q |
208 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccttattccaccatccgtcattgacaacactgttttgaataaata |
307 |
Q |
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| T |
744 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccatattccac------------acaacactgttttgaataaata |
657 |
T |
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| Q |
308 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgc |
407 |
Q |
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| T |
656 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgc |
557 |
T |
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| Q |
408 |
ggtaacaatttccagatttcaatttgag |
435 |
Q |
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| T |
556 |
ggtaacaatttccagatttcaatttgag |
529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 31038392 - 31038807
Alignment:
| Q |
8 |
aaaacttatgctggtagataagctcaagccctagtgggataacttgtacaacttttcatgatttgtttcaagaaggaaaatcaaatggaaccgtaaaaac |
107 |
Q |
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| T |
31038392 |
aaaacttatgccggtagataagctcaagccctagtgggataacttgtacaacttttcatgatttgtttcacgaaggaaaatcaaatggaaccgtaaaaac |
31038491 |
T |
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| Q |
108 |
agtttggaaaaaccgaacagttcatggtttgtcctgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
207 |
Q |
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| T |
31038492 |
agtttgtaaaaaccgaacagttcatggtttgtcctgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
31038591 |
T |
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| Q |
208 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccttattccaccatccgtcattgacaacactgttttgaataaata |
307 |
Q |
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| T |
31038592 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccatattccac------------acaacactgttttgaataaata |
31038679 |
T |
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| Q |
308 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgc |
407 |
Q |
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| T |
31038680 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgc |
31038779 |
T |
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| Q |
408 |
ggtaacaatttccagatttcaatttgag |
435 |
Q |
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| T |
31038780 |
ggtaacaatttccagatttcaatttgag |
31038807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 31047616 - 31048030
Alignment:
| Q |
8 |
aaaacttatgctggtagataagctcaagccctagtgggataacttgtacaacttttcatgatttgtttcaagaaggaaaatcaaatggaaccgtaaaaac |
107 |
Q |
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| T |
31047616 |
aaaacttatgccggtagataagctcaagccctaatgggataacttgtacaacttttcatgatttgtttcaagaaggaaaatcaaacggaaccgtaaaaac |
31047715 |
T |
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| Q |
108 |
agtttggaaaaaccgaacagttcatggtttgtcctgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
207 |
Q |
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| T |
31047716 |
agtttgtaaaaacc-aagagttcatggtttgtcatgaaccaaacttgttttaagattcagtgcaccaggttatgcgctttttggaccaatattgttttga |
31047814 |
T |
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| Q |
208 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccttattccaccatccgtcattgacaacactgttttgaataaata |
307 |
Q |
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| T |
31047815 |
atggaggccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccatattccac------------acaacactgttttgaataaata |
31047902 |
T |
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| Q |
308 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgc |
407 |
Q |
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| T |
31047903 |
ggttctatctttatagaacagagatgttacctttacgaaccgaactgtatcttgactaaccgagatgcccccataggcttggtttgtgtgtgtagtacgc |
31048002 |
T |
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| Q |
408 |
ggtaacaatttccagatttcaatttgag |
435 |
Q |
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| T |
31048003 |
ggtaacaatttccagatttcaatttgag |
31048030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 435
Target Start/End: Original strand, 31033193 - 31033416
Alignment:
| Q |
214 |
gccatggtgctgtcataggccgcaatggcgtgtttattggggttttctgccttattccaccatccgtcattgacaacactgttttgaa-taaataggttc |
312 |
Q |
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| T |
31033193 |
gccatggtgccatcataagctgcaatggtgtgtttattggggttttctgccataatccaccatccaccattgagaacactattttggactaaacaggttc |
31033292 |
T |
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| Q |
313 |
tatctttatagaacagagatgttacctttacgaaccgaactgtat-cttgactaaccgagatgcccccataggcttggtttctgtgtgtagtacgcggta |
411 |
Q |
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| T |
31033293 |
tatctttatagaacagagatgctacctttacgaaccgaactgttttctttactaaccgagatgcctccataggcttggtttgtgtgtgtagtacgtggta |
31033392 |
T |
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| Q |
412 |
acaatttccagatttcaatttgag |
435 |
Q |
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| T |
31033393 |
acaatttccaaaattcaatttgag |
31033416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 31032989 - 31033132
Alignment:
| Q |
60 |
ttttcatgatttgtttcaagaaggaaaatcaaatggaaccgtaaaaacagtttggaaaaaccgaacagttcatggtttgtcctgaaccaaacttgtttta |
159 |
Q |
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| T |
31032989 |
ttttcatgatttggttcaagaaggaaaaccaaattgaaccgcaaaaacagtttggaaaaaccgaacagttcatggtttgtcctgaaccaaacttgtttta |
31033088 |
T |
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| Q |
160 |
agattcagtgcaccaggttatgcgctttttggaccaatattgtt |
203 |
Q |
| |
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| T |
31033089 |
aggttcagtgcaccagcctatgtgctttttggaccaatattgtt |
31033132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 31051936 - 31052079
Alignment:
| Q |
226 |
tcataggccgcaatggcgtgtttattggggttttctgccttattccaccatccgtcattgacaacactgttttgaataaataggttctatctttatagaa |
325 |
Q |
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|||| ||| ||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||| |
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| T |
31051936 |
tcattggctgcaatggtgtgtttattggagttttctgccatattccaccatccgtcatcgacaacactgttttgactaaacaggttctacatttatagaa |
31052035 |
T |
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| Q |
326 |
cagagatgttacctttacgaaccgaactg-tatcttgactaacc |
368 |
Q |
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|||||||||||||||| | |||||||||| | |||||||||||| |
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| T |
31052036 |
cagagatgttacctttgcaaaccgaactgttttcttgactaacc |
31052079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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