View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-8 (Length: 412)
Name: NF4415-Insertion-8
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 11393289 - 11392884
Alignment:
| Q |
8 |
aaaatcaaatcaatgtggcttttgagattatactactgattaaatgtcacaaacgcctatc-ttataaataaccgtggcatccctattttgtgaagcaga |
106 |
Q |
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| T |
11393289 |
aaaatcaaatcaatgtggcttttgagattatactactgattaaatatcacaaacgcctatccttataaataaccgtggcatccctatgttatgaagcaga |
11393190 |
T |
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| Q |
107 |
gaacatcatgtatgccaccaaagttctatcgtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatata |
206 |
Q |
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| T |
11393189 |
atacctcatgcatgacaccaaagttctatcgtttgagctaaatggaatggaaatcaaaaccaccattacagatcaaaagaaagtgattgacgaacatata |
11393090 |
T |
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| Q |
207 |
tcgtctttcttacgccctacagacaattatggaaccaaggtgatcggatttgataccgagtggcgtaaaattatccttaatgatcgtgatgaaaccaatt |
306 |
Q |
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| T |
11393089 |
tcgtctttcttacgccctacagacaatcatggaaccaaggtgatcggatttgatactgagtggcgtaaaattatcgataaggatcaagatggaaccaatt |
11392990 |
T |
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| Q |
307 |
ccgggaccaaaccgggaactattcaactttgtgatggacattcgtgtcttattattgagttacattgtggctttcgggattataatcttcccctttcact |
406 |
Q |
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| T |
11392989 |
cccggaccaaaccgggaactattcaactttgtgatggacattcgtgtcttattattgagttacattattgctttcgggattataatcttcccctttcact |
11392890 |
T |
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| Q |
407 |
gcttaa |
412 |
Q |
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| T |
11392889 |
gcttaa |
11392884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 34 - 374
Target Start/End: Complemental strand, 11387269 - 11386927
Alignment:
| Q |
34 |
attatactactgattaaatgtcacaaacgcctatct-tataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgccaccaaagttc |
132 |
Q |
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| T |
11387269 |
attatactactgatcaaatgtcacacacgcttatccctataaataaccgtggcatccctattttgtgaagcagagaacatcatgtatgacaccaaagttc |
11387170 |
T |
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| Q |
133 |
tatcgtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaa |
232 |
Q |
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| T |
11387169 |
tatcgtttgagctaaatggaatggaaatcaaaaccactattacaaatcaaaagaaagtgattgacaaacatatgtcgtctttcttacaccctacagacaa |
11387070 |
T |
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| Q |
233 |
ttatggaaccaaggtgatcggatttgataccgagtggcgtaaaattatc-cttaatgatcgtgatgaaaccaattccgggaccaaaccgggaactattca |
331 |
Q |
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| T |
11387069 |
ttatgtaaccaaggtgatcggatttgataccgagtggcgtaaaattatcggtaaatgatcatgatgaaaccaattcccagaccaaaccgggaactcttca |
11386970 |
T |
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| Q |
332 |
actttgtgatggacattcgtgtcttattattgagttacattgt |
374 |
Q |
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| T |
11386969 |
actttgtgatggacattcatgtcttattattgagttacattgt |
11386927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 281
Target Start/End: Complemental strand, 17198660 - 17198516
Alignment:
| Q |
137 |
gtttgagctaaatggaatggaaatcaaaaccactattacagattataagaaagagattgacgaacatatatcgtctttcttacgccctacagacaattat |
236 |
Q |
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| T |
17198660 |
gtttgagcttaatggagatgaaatccaaaccaccgtgacagatgatgagaaattgattgacgatcatatatcatctttcttacgccctaccaacaatcac |
17198561 |
T |
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| Q |
237 |
ggaaccaaggtgatcggatttgataccgagtggcgtaaaattatc |
281 |
Q |
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| T |
17198560 |
ggaacgaaggttattgggattgataccgagtggcgtccaattatc |
17198516 |
T |
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