View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415-Insertion-9 (Length: 379)
Name: NF4415-Insertion-9
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 211 - 379
Target Start/End: Original strand, 35672861 - 35673032
Alignment:
| Q |
211 |
catagtggaaggcaacaaacacatcacacatgtctcctgaat---cctcctaatatattccctttcaccaaaagcatccaaacacaagttacaccataaa |
307 |
Q |
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| T |
35672861 |
catagtggaaggcaacaaacacatcacacatgtctcctgaatgctcctcctaatatattccctttcactaaaaacatccaaacacaagttacaccataaa |
35672960 |
T |
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| Q |
308 |
caaaaagtgacccaaactttgagtcatagttttcaaccctagttcaggtttttgttcttcacgtcatcatca |
379 |
Q |
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| T |
35672961 |
caaaaagtgacccaaactttgagtcattgttttcaaccctagttcaggtttttgttcttcacgtcatcatca |
35673032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 35672684 - 35672782
Alignment:
| Q |
34 |
aggcataatcgtgattttttcgggataatacttttccctttaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
132 |
Q |
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| T |
35672684 |
aggcataatcgtgattttttcgggataatacttttcccttcaactagtatttcccttcagacattaatcattaactatactatcgcattttgatcaggc |
35672782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 371
Target Start/End: Original strand, 35669663 - 35669804
Alignment:
| Q |
234 |
tcacacatgtctcctgaatcctcctaatatattccctttcaccaaaagcatccaaacacaagttacac--cataaacaaaa-agtgacccaaac---ttt |
327 |
Q |
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| T |
35669663 |
tcacaaatgtctcctgaatcctcctaatatattcgatt-cactaaatagagccaaacacaagttacacaacataaacaaaaaagtgacccaaactttttt |
35669761 |
T |
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| Q |
328 |
gagtcatagttttcaaccctagttcaggtttttgttcttcacgt |
371 |
Q |
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| T |
35669762 |
gagttctagttttcaaccgt-gttcaagtttttgtttttcacgt |
35669804 |
T |
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