View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_high_10 (Length: 243)
Name: NF4415_high_10
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_high_10 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 15591806 - 15591681
Alignment:
| Q |
121 |
taaaaatcaaccacttttatagttacaatatcaagttgaacata---gtaaataataaaaactaattcatcacacagatgatttacagatttatctttgc |
217 |
Q |
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| T |
15591806 |
taaaaatcaaccacttttatagttacaatatcaagttgaacataatagtaaataataaaaactaattcatctcacagatgatttacaaatttatctttgc |
15591707 |
T |
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| Q |
218 |
atagactatcaacgacaacgatgtac |
243 |
Q |
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| T |
15591706 |
atagactatcaacgacagcgatgtac |
15591681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 15592155 - 15592083
Alignment:
| Q |
39 |
aagtgaataacagctgaatattattgaatatattctctggaaagtttctctcaatcagagatagaacatatac |
111 |
Q |
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| T |
15592155 |
aagtgaataacagttgaattttattgaatatattctctggagagtttctctcaattagagatagaacacatac |
15592083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 15605671 - 15605628
Alignment:
| Q |
68 |
atattctctggaaagtttctctcaatcagagatagaacatatac |
111 |
Q |
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| T |
15605671 |
atattctctggagagttgctctcaatcagagatagaacatatac |
15605628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 14651952 - 14651913
Alignment:
| Q |
122 |
aaaaatcaaccacttttatagttacaatatcaagttgaac |
161 |
Q |
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| T |
14651952 |
aaaaatcaaccacttttatagttacactatcaaattgaac |
14651913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 14661743 - 14661704
Alignment:
| Q |
122 |
aaaaatcaaccacttttatagttacaatatcaagttgaac |
161 |
Q |
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|||||||||||||||||||||||||| |||||| |||||| |
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| T |
14661743 |
aaaaatcaaccacttttatagttacactatcaaattgaac |
14661704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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