View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4415_high_15 (Length: 207)

Name: NF4415_high_15
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4415_high_15
NF4415_high_15
[»] chr5 (4 HSPs)
chr5 (18-133)||(9958349-9958464)
chr5 (18-70)||(3455487-3455539)
chr5 (46-133)||(32362751-32362838)
chr5 (81-133)||(42318616-42318668)
[»] chr7 (6 HSPs)
chr7 (38-135)||(40691016-40691113)
chr7 (41-136)||(37952466-37952561)
chr7 (38-133)||(20354869-20354964)
chr7 (38-133)||(38352294-38352389)
chr7 (38-131)||(39770296-39770389)
chr7 (38-70)||(32124466-32124498)
[»] scaffold0021 (1 HSPs)
scaffold0021 (19-93)||(109557-109631)
[»] chr1 (3 HSPs)
chr1 (137-191)||(52058628-52058682)
chr1 (18-70)||(51156074-51156126)
chr1 (38-133)||(45364162-45364257)
[»] chr4 (1 HSPs)
chr4 (38-135)||(17329206-17329303)
[»] chr3 (5 HSPs)
chr3 (38-135)||(31169564-31169661)
chr3 (79-136)||(51999347-51999404)
chr3 (38-106)||(35471640-35471707)
chr3 (41-132)||(50415095-50415186)
chr3 (38-134)||(49406622-49406718)
[»] scaffold0015 (1 HSPs)
scaffold0015 (38-93)||(83246-83301)
[»] chr8 (4 HSPs)
chr8 (38-133)||(44503953-44504048)
chr8 (38-123)||(23550430-23550515)
chr8 (38-135)||(30528941-30529038)
chr8 (81-136)||(35932587-35932642)
[»] chr6 (1 HSPs)
chr6 (41-135)||(8675387-8675481)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 9958349 - 9958464
Alignment:
Q  18 gtttcaacttattgaatttgttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaatagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  9958349 gtttcaacttattgaatttgttcatcatctctctcctctttcctcattttcaataggctattccaatggtttcaacctattgaaaatcattttcaatagg 9958448  T
Q  118 ccattggagatggtct 133  Q
    ||||||||||||||||    
T  9958449 ccattggagatggtct 9958464  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3455487 - 3455539
Alignment:
Q  18 gtttcaacttattgaatttgttcatcatctctctcctcttttctcattttcaa 70  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  3455487 gtttcaacttattgaatttgttcatcatctctctcctcttccctcattttcaa 3455539  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 32362838 - 32362751
Alignment:
Q  46 ctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    |||||||||||| |||||||||||| ||||   ||||||| |||||||   |||||||| |  ||||||| ||||||| |||||||||    
T  32362838 ctctctcctcttctctcattttcaataaccctctccaatgatttcaacaggttgaaaatgacattcaataagccattgtagatggtct 32362751  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 42318616 - 42318668
Alignment:
Q  81 caatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    |||||||||||||||||||||  |||  ||||||||||||||| | |||||||    
T  42318616 caatggtttcaacctattgaatttcagattcaataggccattgtacatggtct 42318668  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 40691016 - 40691113
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 135  Q
    |||||||||||| |||||||   |||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40691016 ttcatcatctctttcctcttccttcattttcaacaaggctttgcaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 40691113  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 37952466 - 37952561
Alignment:
Q  41 atcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtcttag 136  Q
    |||| ||||||||||||  ||||| ||||||||   ||| |||||||||||||||||||||| |||  ||||||||||||||| | ||||||||||    
T  37952466 atcacctctctcctcttccctcatattcaacaaggcattgcaatggtttcaacctattgaaactcagattcaataggccattgtacatggtcttag 37952561  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 20354869 - 20354964
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    ||||||| ||||||||||||| ||||||||||| | |||  ||||||  ||||||| ||||||||||   |||||||| ||||||| || ||||||    
T  20354869 ttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaataagccattgtaggtggtct 20354964  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 38352294 - 38352389
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    ||||||| ||||||||||||  ||||||||||| | |||  ||||||  ||||||  ||||||||||   |||||| | |||||||||||||||||    
T  38352294 ttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaaaatattgaaaattgctttcaacaagccattggagatggtct 38352389  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 39770296 - 39770389
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggt 131  Q
    |||||||  |||||||||||| ||||||||||| | |||  | ||||  ||||||| ||||||||||   |||||| | |||||||||||||||    
T  39770296 ttcatcacgtctctcctctttcctcattttcaatacccttcttcaatcatttcaacatattgaaaattgctttcaacaagccattggagatggt 39770389  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 32124498 - 32124466
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaa 70  Q
    ||||||||||||||||||||| |||||||||||    
T  32124498 ttcatcatctctctcctctttcctcattttcaa 32124466  T

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Target: scaffold0021 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 109631 - 109557
Alignment:
Q  19 tttcaacttattgaatttgttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaac 93  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||    
T  109631 tttccacttattgaatttgttcatcatctctctcctctttcctcattttcaacaagcttctccaatggtttcaac 109557  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 52058682 - 52058628
Alignment:
Q  137 gaagagacctgttgaaaatagatgccattttaaataccattaatttgtgtagaat 191  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52058682 gaagagaccagttgaaaatagatgccattttaaataccattaatttgtgtagaat 52058628  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 51156126 - 51156074
Alignment:
Q  18 gtttcaacttattgaatttgttcatcatctctctcctcttttctcattttcaa 70  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  51156126 gtttcaacttattgaatttgttcatcatctctctcctcttccctcattttcaa 51156074  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 45364162 - 45364257
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    ||||||||||||||||||||  ||||||||||| | |||  ||||||| ||||||| |||||||||| |  ||||| | ||||||| | |||||||    
T  45364162 ttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatgacattcaacaagccattgtaaatggtct 45364257  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 17329303 - 17329206
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 135  Q
    ||||||| |||| ||||||| |||||||||||| |    | ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  17329303 ttcatcacctctttcctcttctctcattttcaatagggcactccaatggtttcaacatgttgaaaatcattttcaataggccattgtagatggtctta 17329206  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 31169661 - 31169564
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 135  Q
    ||||||| |||||||||||| |||||||||||| ||||   ||||||| ||||||||||||||||||    ||||| | ||||||| |||||||||||    
T  31169661 ttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtctta 31169564  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 51999404 - 51999347
Alignment:
Q  79 tccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtcttag 136  Q
    ||||||||||||||| |||||||| ||||||||||||  ||||||||| |||||||||    
T  51999404 tccaatggtttcaacatattgaaagtcattttcaataacccattggaggtggtcttag 51999347  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 35471707 - 35471640
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatca 106  Q
    ||||||||||||||||||||| |||||||||||||| ||  ||||||| |||||| |||| ||||||||    
T  35471707 ttcatcatctctctcctctttcctcattttcaacaagcttctccaatgctttcaa-ctatggaaaatca 35471640  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 50415186 - 50415095
Alignment:
Q  41 atcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtc 132  Q
    |||| ||||||||||||  ||||| ||||||||   ||| |||||||||||||||||||||  |||  ||||||||||||||| | ||||||    
T  50415186 atcacctctctcctcttccctcatattcaacaaggcattgcaatggtttcaacctattgaatgtcagattcaataggccattgtacatggtc 50415095  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 49406718 - 49406622
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctt 134  Q
    ||||||| |||| ||||||| |||||||||||| | ||   ||||||||||||||  | ||||||||    ||||||||||||||| | ||||||||    
T  49406718 ttcatcacctctttcctcttctctcattttcaataccccgctccaatggtttcaatatgttgaaaatggcattcaataggccattgtaaatggtctt 49406622  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 83301 - 83246
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaac 93  Q
    ||||||||||||||||||||| ||||| |||||||| ||  |||||||||||||||    
T  83301 ttcatcatctctctcctctttcctcatattcaacaagcttctccaatggtttcaac 83246  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 44503953 - 44504048
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtct 133  Q
    ||||||| |||||||||||| |||||||||||| ||||   ||||||| |||||||||  |||||||    ||||||| ||||||| |||||||||    
T  44503953 ttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctgatgaaaatggcattcaataagccattgtagatggtct 44504048  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 23550430 - 23550515
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattg 123  Q
    ||||||| ||||||||||||| ||||||||||| | |||  ||||||  ||||||| ||||||||||   |||||||| |||||||    
T  23550430 ttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaataagccattg 23550515  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 30529038 - 30528941
Alignment:
Q  38 ttcatcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 135  Q
    ||||||| |||| ||||||| |||||||||||| | ||   ||||||||||||||  |||||||||| |  ||||||| ||||||| | |||||||||    
T  30529038 ttcatcacctctttcctcttctctcattttcaatacccctctccaatggtttcaatatattgaaaataacattcaatatgccattgtaaatggtctta 30528941  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 35932587 - 35932642
Alignment:
Q  81 caatggtttcaacctattgaaaatcattttcaataggccattggagatggtcttag 136  Q
    |||||||||||||||||||||  |||  ||||||||||||||| | ||||||||||    
T  35932587 caatggtttcaacctattgaatttcagattcaataggccattgtacatggtcttag 35932642  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 8675387 - 8675481
Alignment:
Q  41 atcatctctctcctcttttctcattttcaacaacctattccaatggtttcaacctattgaaaatcattttcaataggccattggagatggtctta 135  Q
    |||| ||||||||||||  ||| | ||||||||   ||| |||||||||||||||||| ||  |||  ||||||||||||||| | |||||||||    
T  8675387 atcacctctctcctcttccctcttattcaacaaggcattgcaatggtttcaacctattaaatgtcagattcaataggccattgtacatggtctta 8675481  T

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