View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_high_2 (Length: 423)
Name: NF4415_high_2
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 59 - 376
Target Start/End: Complemental strand, 1581677 - 1581358
Alignment:
| Q |
59 |
ttagtagccaagaacaataatgacaactttgaagccctaattagattcattggaaatggagagggtctaaaaatactctcttcttattgttcatattttt |
158 |
Q |
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| T |
1581677 |
ttagtggccaagaacaataatgacaactttgaagctctaattagattcattggaaatggagagggtctaaaaatactctcttctgattgttcatattttt |
1581578 |
T |
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| Q |
159 |
cctctacattaaacctaatgttgccttagctataaacaatttactgcatgccccagttacaaacaaaaacctcatcagtgttaacagctttactaaaaat |
258 |
Q |
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| T |
1581577 |
cccctacattaaacctaatgtcgccttggctataaacaatttactgcatgccccaattataaacaaaaacctcatcagtgtcaacaactttactaaaaat |
1581478 |
T |
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| Q |
259 |
aac--tgtttcgatttcaatggttactaagtaatatgcatatatagttctctcgttactttgtatttgaggctgcacattacaaaatcataatatgcttg |
356 |
Q |
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| T |
1581477 |
aactttgtttcgatttcaatgttgactaagtaatatgcatatatagttctcacgttactttgtatttgaggctacacattacaaaatcataatatgcttg |
1581378 |
T |
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| Q |
357 |
agcatgataaaatgtgaagc |
376 |
Q |
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| T |
1581377 |
agcatgataaaatatgaagc |
1581358 |
T |
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