View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_high_6 (Length: 288)
Name: NF4415_high_6
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 52106968 - 52107107
Alignment:
| Q |
139 |
tcaaaattggagagaaaaaaccgttattgttgtcataattaggacaaccaaacaactaacattatgtgttgcacaaaagaaaaacattatgtgaaatgtt |
238 |
Q |
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| T |
52106968 |
tcaaaattggagagaaaaaaccgttattgttgtcataattaggacaaccaaacaactaacattatgtgttgcacaaaa-aaaaacattattggaaatgtt |
52107066 |
T |
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| Q |
239 |
ttacgacacatactctctcaaacgccaaccaacccctatgc |
279 |
Q |
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| T |
52107067 |
ttacaacacatactctctcaaacgccaactaacccctatgc |
52107107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 52106889 - 52106954
Alignment:
| Q |
25 |
gtactcaccacatgttgattttcggtaacactgctaatacaacattgaatttgggaaaaacgacaa |
90 |
Q |
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| T |
52106889 |
gtactcacaagatgttgattttcggtaacactgctaatacaacattgaatttgggaaaaacgacaa |
52106954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 35038560 - 35038646
Alignment:
| Q |
80 |
aaaaacgacaaggagaaattaaagtcacaactataacataagaatacgacattggcacatcaaaattggagagaaaaaaccgttatt |
166 |
Q |
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| T |
35038560 |
aaaaacgacaaggagaaattaaaatctcaagcataacataagaatatgccattggaacatcaaaattggagagaaaaaaccattatt |
35038646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 35039762 - 35039685
Alignment:
| Q |
92 |
gagaaattaaagtcacaactataacataagaatacgacattggcacatcaaaattggagagaaaaaaccgttattgtt |
169 |
Q |
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| T |
35039762 |
gagaaattaaaatcacaaccataacattataacatgacattggaacaacaaaattggagagaaaaaacaattattgtt |
35039685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 35039810 - 35039769
Alignment:
| Q |
32 |
ccacatgttgattttcggtaacactgctaatacaacattgaa |
73 |
Q |
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| T |
35039810 |
ccacatgttgaatttcggtaatactgctgatacaacattgaa |
35039769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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