View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_low_1 (Length: 550)
Name: NF4415_low_1
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Original strand, 32603963 - 32604511
Alignment:
| Q |
10 |
attatacttggattacacacacatggaaaacatgttacgattacacacacatgggaaaaagcaacata-----ttattaagacttaaaaaagcaacatag |
104 |
Q |
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| T |
32603963 |
attatacttggattacacacacatggaaaacatgttacgattacacacacatgggaaaaagcaacttagttcattattaagacttaaaaaagcaacatag |
32604062 |
T |
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| Q |
105 |
ttcattatttgaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcctaagattatacagtacttgtttttc |
204 |
Q |
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| T |
32604063 |
ttcattatttgaactgtgtggaaaaaatgattgtggaaaaaagagtcttataaatgtagtacgataatgttttcccaagatta-----tacttgtttttc |
32604157 |
T |
|
| Q |
205 |
tgagttctttcatatc-aagttattccataacaatgatttaaccatttttacaacatggatgtttgaaccaaatatgagtaagttat--ctacatggttt |
301 |
Q |
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| T |
32604158 |
tgagttctttcatatcaaagttattccataacaatgatttaaccatttttacaacatggatgtttgaaccaaatatgagtaaggtattccaacatgg-at |
32604256 |
T |
|
| Q |
302 |
gtttgccactctaattcacattaaactcattctatataaccaaattatcaaacttttcaaccacaaaaccattagaataaaactaatccagtctcaa--a |
399 |
Q |
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| T |
32604257 |
gtttgccactctaattcacattaaactcattctatataaccaaattatcaaacttttcaaccacaaaaccattagaataaaactaatccaatctcaaaca |
32604356 |
T |
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| Q |
400 |
gaatcagagtccca-ttcagtttatgttccattctagaaccactccttcaataggcaactaggaccactcaaacttcct---------------aaggga |
483 |
Q |
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| T |
32604357 |
gaatcagagtcccatttcaatttatgttccattctagaaccactccttcaatagggaactaggaccactcaaacttcctaagggacaattcccaaaggga |
32604456 |
T |
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| Q |
484 |
caagattctaatagggcaacttattacgagggacaaaaaagaaatgagagaagtg |
538 |
Q |
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| T |
32604457 |
caagatcctaataggccaacttattacgagggacaaaaaagaaatgagagaagtg |
32604511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 32603870 - 32603901
Alignment:
| Q |
142 |
aaaaagagtcttataaatgtagtacgataatg |
173 |
Q |
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| T |
32603870 |
aaaaagagtcttataaatgtagtacgataatg |
32603901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 11811459 - 11811504
Alignment:
| Q |
251 |
tttacaacatggatgtttgaaccaaatatgagtaagttatctacat |
296 |
Q |
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| T |
11811459 |
tttacaacatggatctttgaaccaaatgtgagcaagtcatctacat |
11811504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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