View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_low_10 (Length: 244)
Name: NF4415_low_10
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 43521516 - 43521375
Alignment:
| Q |
18 |
agaatatggcacgatcgacatgaatatatatcaatataattataaagaatctgttgtttgatctgatgctacaaagaaagaatcttttgtgagtcatagg |
117 |
Q |
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| T |
43521516 |
agaatatggcacgatcgacatgaatatatatcaatataactataaagaatctgttgtttgatctgatgttacaaagaaagaatcttttgtgagtcatagg |
43521417 |
T |
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| Q |
118 |
tttcatgatgtttgcggtcacaatttacttgcgactgtacatg |
160 |
Q |
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| T |
43521416 |
tttcatgatgtttgcggtcacaa-ttaattgcgactgtacatg |
43521375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 43521360 - 43521320
Alignment:
| Q |
180 |
gaaggagactgtacatgtttttggatcctgagacttgagga |
220 |
Q |
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| T |
43521360 |
gaaggagactgtacatgtttttggatcctgagacttgagga |
43521320 |
T |
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