View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_low_12 (Length: 240)
Name: NF4415_low_12
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 41922435 - 41922223
Alignment:
| Q |
15 |
atgatgttcatttacctctcgtcatcgatgatgctccagtaccaaaatatgctatctgtttctttagactccatatccattctctaggaacatgaattgg |
114 |
Q |
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| T |
41922435 |
atgatgttcatttacctctcgtcattgatgatgccccagtaccaaaatatgctatctgtttctttagactccatatccattttctaggaacatgaattgg |
41922336 |
T |
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| Q |
115 |
ttgtttcattgaagcataatcagcaaaaacctacaagagaaaaaagatattacagcaagtatctttcaagacattaattatgtactttatgatccaaata |
214 |
Q |
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| T |
41922335 |
ttttttcattgaagcataatcagcaaaaacctacaagagaaaaaagatattacagcaagtatctttcaagac----attatgtactttatgatccaaata |
41922240 |
T |
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| Q |
215 |
tgcaatagaagtattat |
231 |
Q |
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|||||||||||| |||| |
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| T |
41922239 |
tgcaatagaagttttat |
41922223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 1699743 - 1699614
Alignment:
| Q |
18 |
atgttcatttacctctcgtcatcgatgatgctccagtaccaaaatatgctatctgtttctttagactccatatccattctctaggaacatgaattggttg |
117 |
Q |
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||||||||||||||||||| || | ||||| ||||||||||||||||| ||| |||||| ||||||||||||||||| || |||||||| ||||||||| |
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| T |
1699743 |
atgttcatttacctctcgttattgttgatgttccagtaccaaaatatgttattcgtttctctagactccatatccattgtcgaggaacattaattggttg |
1699644 |
T |
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| Q |
118 |
tttcattgaagcataatcagcaaaaaccta |
147 |
Q |
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| T |
1699643 |
aatcattgaagcataatcagcaaaaaccta |
1699614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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