View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_low_13 (Length: 237)
Name: NF4415_low_13
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3456808 - 3457028
Alignment:
| Q |
1 |
tttgctaagattgtcaagctcttctcgaagaagccgaaccgcgttcgcttgcttatactcccaatgttgcattaaataagccaattgagatgacccttta |
100 |
Q |
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| T |
3456808 |
tttgctaagattgtcaagctcttctcgaagaagccgaaccgcgttcgcttgcttatactcccaatgttgcattaaataagccaattgagatgacccttta |
3456907 |
T |
|
| Q |
101 |
tctgtataatttgtaagctccattaatctttgaaaatcagctatagctggttcttctaagattgttacttcttccaacatatcttgatctcttcctggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456908 |
tctgtataatttgtaagctccattaatctttgaaaatcagctattgctggttcttctaagattgttacttcttccaacatatcttgatctcttcctggtt |
3457007 |
T |
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| Q |
201 |
tttctatgttgaattgttttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3457008 |
tttctatgttgaattgttttc |
3457028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3481162 - 3481359
Alignment:
| Q |
1 |
tttgctaagattgtcaagctcttctcgaagaagccgaaccgcgttcgcttgcttatactcccaatgttgcattaaataagccaattgagatgacccttta |
100 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| | ||| || || || ||||||||||||||||||| || | || ||| || ||||| |||||| || |
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| T |
3481162 |
tttgctaaggttgtcgagctcttctcgaagaaggcaaactgcatttgcctgcttatactcccaatgtttcacgagattagctaactgagaagaccctata |
3481261 |
T |
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| Q |
101 |
tctgtataatttgtaagctccattaatctttgaaaatcagctatagctggttcttctaagattgttacttcttccaacatatcttgatctcttcctgg |
198 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| |||||| ||||||| |
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| T |
3481262 |
tctgtataatctgtaagctccacaattctttgaaaatcagctataattggttcctctaagactgttacttcttccaaaatattttgatccattcctgg |
3481359 |
T |
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