View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4415_low_15 (Length: 232)

Name: NF4415_low_15
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4415_low_15
NF4415_low_15
[»] chr5 (12 HSPs)
chr5 (17-154)||(35672509-35672643)
chr5 (163-218)||(30695596-30695652)
chr5 (163-205)||(40371548-40371590)
chr5 (163-218)||(12019088-12019145)
chr5 (163-218)||(12023671-12023728)
chr5 (164-205)||(40367386-40367427)
chr5 (163-204)||(7103675-7103717)
chr5 (163-204)||(16794483-16794525)
chr5 (164-204)||(7099107-7099148)
chr5 (164-204)||(16799026-16799067)
chr5 (164-204)||(37682359-37682400)
chr5 (163-204)||(37659041-37659083)
[»] chr2 (6 HSPs)
chr2 (164-232)||(8055694-8055762)
chr2 (163-232)||(8051176-8051248)
chr2 (161-203)||(6463225-6463267)
chr2 (163-218)||(36670850-36670907)
chr2 (164-218)||(36675398-36675454)
chr2 (172-228)||(12999281-12999338)
[»] chr7 (6 HSPs)
chr7 (163-229)||(27757187-27757253)
chr7 (164-216)||(22901521-22901573)
chr7 (163-217)||(27761715-27761768)
chr7 (163-232)||(7944384-7944456)
chr7 (164-232)||(7939808-7939879)
chr7 (164-205)||(47419376-47419417)
[»] chr4 (5 HSPs)
chr4 (163-217)||(44147361-44147415)
chr4 (163-217)||(44151872-44151926)
chr4 (164-218)||(31670381-31670434)
chr4 (164-217)||(53722325-53722378)
chr4 (164-218)||(3771247-3771303)
[»] scaffold0440 (1 HSPs)
scaffold0440 (163-232)||(7832-7903)
[»] chr6 (5 HSPs)
chr6 (163-217)||(8319805-8319858)
chr6 (164-217)||(8315267-8315319)
chr6 (164-205)||(27535334-27535375)
chr6 (164-228)||(17096075-17096140)
chr6 (163-204)||(27574506-27574547)
[»] chr1 (3 HSPs)
chr1 (163-217)||(39794198-39794251)
chr1 (164-217)||(39796802-39796854)
chr1 (164-216)||(16588277-16588329)
[»] chr3 (4 HSPs)
chr3 (161-232)||(54167063-54167139)
chr3 (163-232)||(54171645-54171719)
chr3 (163-217)||(21847428-21847484)
chr3 (164-217)||(21850518-21850573)
[»] chr8 (13 HSPs)
chr8 (163-218)||(201985-202042)
chr8 (163-218)||(316822-316879)
chr8 (163-204)||(30410104-30410145)
chr8 (163-218)||(43811784-43811841)
chr8 (164-218)||(197468-197524)
chr8 (164-218)||(312305-312361)
chr8 (165-218)||(43807213-43807268)
chr8 (172-218)||(28644852-28644898)
chr8 (164-204)||(30405585-30405625)
chr8 (162-204)||(38757354-38757397)
chr8 (194-227)||(30405628-30405661)
chr8 (195-228)||(30405652-30405685)
chr8 (194-227)||(30410148-30410181)
[»] scaffold0044 (2 HSPs)
scaffold0044 (163-218)||(49166-49224)
scaffold0044 (164-218)||(44587-44644)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 35672643 - 35672509
Alignment:
Q  17 aagatgaaaatccaatggctaaaaaccattcgctataaattctggatgttttttctcgggacatagcagctctcatgtctgaattggcggaggacgtttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35672643 aagatgaaaatccaatggctaaaaaccattcgctataaattctggatgttttttctcgggacatagcagctctcatgtctgaattggcggaggacgtttt 35672544  T
Q  117 tgtaaggaataataaaatgaagaattgaattacagaag 154  Q
    ||||||||   ||||||||||||||||||| |||||||    
T  35672543 tgtaagga---ataaaatgaagaattgaatcacagaag 35672509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 30695652 - 30695596
Alignment:
Q  163 ttgatagcgcagaaaatc-agaagcggaagcttgttcagaagctagttcagaagcag 218  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  30695652 ttgatagcgcagaaaaaccagaagcggaagcttgttcagaagctagttcagaagcag 30695596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 40371548 - 40371590
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagct 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  40371548 ttgatagcgcagaaaaccagaagcggaagcttgttcagaagct 40371590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 12019145 - 12019088
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12019145 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 12019088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 12023728 - 12023671
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12023728 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 12023671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 40367386 - 40367427
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagct 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  40367386 tgatagcgcagaaaaccagaagcggaagcttgttcagaagct 40367427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 7103675 - 7103717
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  7103675 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagc 7103717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 16794525 - 16794483
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  16794525 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagc 16794483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 7099107 - 7099148
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  7099107 tgatagcgcagaaaatcagaagcggaagctttgttcagaagc 7099148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 16799067 - 16799026
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  16799067 tgatagcgcagaaaatcagaagcggaagctttgttcagaagc 16799026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 37682400 - 37682359
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  37682400 tgatagcgcagaaaatcagaagcggaagctttgttcagaagc 37682359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 37659083 - 37659041
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc 204  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  37659083 ttgatagcgcagaaaatcagaagcagaagctttgttcagaagc 37659041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 8055762 - 8055694
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagcagatcagaagcactgt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8055762 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagcagttcagaagcactgt 8055694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 8051248 - 8051176
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagcagatcagaagcactgt 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| |||||||||||||    
T  8051248 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagcactgt 8051176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 6463225 - 6463267
Alignment:
Q  161 tattgatagcgcagaaaatcagaagcggaagcttgttcagaag 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  6463225 tattgatagcgcagaaaaccagaagcggaagcttgttcagaag 6463267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 36670907 - 36670850
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  36670907 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 36670850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 36675454 - 36675398
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  36675454 tgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 36675398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 12999281 - 12999338
Alignment:
Q  172 cagaaaatcagaagcggaagcttgttcagaagctagttcagaagc-agatcagaagca 228  Q
    ||||| |||||||||||||||| || ||||||||| ||||||||| || |||||||||    
T  12999281 cagaacatcagaagcggaagctagtccagaagctaattcagaagctagttcagaagca 12999338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 27757253 - 27757187
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagcagatcagaagcac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27757253 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagcagttcagaagcac 27757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 22901573 - 22901521
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22901573 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagtttagaagc 22901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 27761768 - 27761715
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27761768 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagc-agttcagaagca 27761715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 7944384 - 7944456
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagcagatcagaagcactgt 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| |||||||||||||    
T  7944384 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagcactgt 7944456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 7939808 - 7939879
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagcagatcagaagcactgt 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| |||||||||||||    
T  7939808 tgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcagttcagaagcactgt 7939879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 47419376 - 47419417
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47419376 tgatagcgcagaaaatcagaagcggaagcttgttcagaagct 47419417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 44147415 - 44147361
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147415 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 44147361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 44151926 - 44151872
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44151926 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 44151872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 31670434 - 31670381
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagcag 218  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||    
T  31670434 tgatagcgca-aaaatcagaagcggaagctagttcagaagttagttcagaagcag 31670381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 53722378 - 53722325
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||| ||||||    
T  53722378 tgatagcgcagaaaaccagaagcggaagcttgttcagaagcaggttctgaagca 53722325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 3771303 - 3771247
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  3771303 tgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 3771247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 7903 - 7832
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca--gatcagaagcactgt 232  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||||    
T  7903 ttgatagcgcagaaaattagaagcggaagcttgttcagaagcaagttcagaagcactgttcagaagcactgt 7832  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 8319805 - 8319858
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8319805 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagc-agttcagaagca 8319858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 8315267 - 8315319
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8315267 tgatagcgcagaaaatcagaagcggaagcttgttcagaagc-agttcagaagca 8315319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 27535334 - 27535375
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagct 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  27535334 tgatagcgcagaaaaccagaagcggaagcttgttcagaagct 27535375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 17096075 - 17096140
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagc-tagttcagaagcagatcagaagca 228  Q
    ||||||||||||||||||||||| |||||||||||| ||||    ||||||||||| |||||||||    
T  17096075 tgatagcgcagaaaatcagaagcagaagcttgttcataagcactcttcagaagcagttcagaagca 17096140  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 27574506 - 27574547
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagc 204  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  27574506 ttgatagcgcagaaaaccaaaagcggaagcttgttcagaagc 27574547  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 39794251 - 39794198
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39794251 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagc-agttcagaagca 39794198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 39796854 - 39796802
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagca 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39796854 tgatagcgcagaaaatcagaagcggaagcttgttcagaagc-agttcagaagca 39796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 16588277 - 16588329
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagctagttcagaagc 216  Q
    ||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||    
T  16588277 tgatagcacagaaaaccagaagcggaagcttgttcataagcttgttcagaagc 16588329  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 54167063 - 54167139
Alignment:
Q  161 tattgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagca--gatcagaagcactgt 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||  | |||||||||||||    
T  54167063 tattgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcactgttcagaagcactgt 54167139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 54171645 - 54171719
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagca--gatcagaagcactgt 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||  | |||||||||||||    
T  54171645 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcactgttcagaagcactgt 54171719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 21847484 - 21847428
Alignment:
Q  163 ttgatagcgcagaaaatc-agaagcggaagcttgttcagaagct-agttcagaagca 217  Q
    |||||||||||||||| | |||||||||||||||||||||||||  |||||||||||    
T  21847484 ttgatagcgcagaaaaaccagaagcggaagcttgttcagaagctctgttcagaagca 21847428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 21850573 - 21850518
Alignment:
Q  164 tgatagcgcagaaaatc-agaagcggaagcttgttcagaagct-agttcagaagca 217  Q
    ||||||||||||||| | |||||||||||||||||||||||||  |||||||||||    
T  21850573 tgatagcgcagaaaaaccagaagcggaagcttgttcagaagctctgttcagaagca 21850518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 201985 - 202042
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  201985 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 202042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 316822 - 316879
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  316822 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 316879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 30410104 - 30410145
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagcttgttcagaagc 204  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  30410104 ttgatagcgcagaaaatcagaagcggaagctagttcagaagc 30410145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 43811784 - 43811841
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  43811784 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 43811841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 197468 - 197524
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  197468 tgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 197524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 312305 - 312361
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  312305 tgatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 312361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 43807213 - 43807268
Alignment:
Q  165 gatagcgcagaaaatcagaagcggaagc-ttgttcagaagct-agttcagaagcag 218  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  43807213 gatagcgcagaaaatcagaagcggaagctttgttcagaagctgtgttcagaagcag 43807268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 28644898 - 28644852
Alignment:
Q  172 cagaaaatcagaagcggaagcttgttcagaagctagttcagaagcag 218  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||    
T  28644898 cagaacatcagaagcggaagctagttcagaagcgagttcagaagcag 28644852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 30405585 - 30405625
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagcttgttcagaagc 204  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  30405585 tgatagcgcagaaaatcagaagcagaagctagttcagaagc 30405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 38757397 - 38757354
Alignment:
Q  162 attgatagcgcagaaaatc-agaagcggaagcttgttcagaagc 204  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  38757397 attgatagcgcagaaaaaccagaagcggaagcttgttcagaagc 38757354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 30405628 - 30405661
Alignment:
Q  194 tgttcagaagctagttcagaagcagatcagaagc 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  30405628 tgttcagaagctagttcagaagcagttcagaagc 30405661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 30405652 - 30405685
Alignment:
Q  195 gttcagaagctagttcagaagcagatcagaagca 228  Q
    |||||||||||||||||||||||| |||||||||    
T  30405652 gttcagaagctagttcagaagcagttcagaagca 30405685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 30410148 - 30410181
Alignment:
Q  194 tgttcagaagctagttcagaagcagatcagaagc 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  30410148 tgttcagaagctagttcagaagcagttcagaagc 30410181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 49166 - 49224
Alignment:
Q  163 ttgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagcag 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||    
T  49166 ttgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcag 49224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 44587 - 44644
Alignment:
Q  164 tgatagcgcagaaaatcagaagcggaagc-ttgttcagaagc--tagttcagaagcag 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||    
T  44587 tgatagcgcagaaaatcagaagcggaagctttgttcagaagcagttgttcagaagcag 44644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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