View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4415_low_16 (Length: 227)
Name: NF4415_low_16
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4415_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 8713226 - 8713306
Alignment:
| Q |
7 |
gttttcttgtgtaatttatctgcatgagttgttagcacaaactagaggtaacacaaatttgtgtttcatatgaattagaga |
87 |
Q |
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| T |
8713226 |
gtttccttgtgtaatttatctgcatgagttgttagcacaaactagaggtaacacaaatttgtgtttcatatgaattagaga |
8713306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 9065113 - 9065193
Alignment:
| Q |
7 |
gttttcttgtgtaatttatctgcatgagttgttagcacaaactagaggtaacacaaatttgtgtttcatatgaattagaga |
87 |
Q |
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| T |
9065113 |
gtttccttgtgtaatttatctgcatgagttgttagcacaaactagaggtaacacaaatttgtgtttcatatgaattagaga |
9065193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 8713406 - 8713444
Alignment:
| Q |
189 |
ggtatttttggaataagataaaaacaaactaaatctatt |
227 |
Q |
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| T |
8713406 |
ggtatttttggaataagataaaaacaaactaaatctatt |
8713444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 9065293 - 9065331
Alignment:
| Q |
189 |
ggtatttttggaataagataaaaacaaactaaatctatt |
227 |
Q |
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| T |
9065293 |
ggtatttttggaataagataaaaacaaactaaatctatt |
9065331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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