View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4415_low_2 (Length: 524)

Name: NF4415_low_2
Description: NF4415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4415_low_2
NF4415_low_2
[»] chr3 (4 HSPs)
chr3 (88-464)||(9130671-9131047)
chr3 (88-464)||(9122575-9122940)
chr3 (463-510)||(9123039-9123086)
chr3 (463-510)||(9131146-9131193)
[»] chr4 (1 HSPs)
chr4 (90-448)||(24524526-24524885)
[»] chr7 (2 HSPs)
chr7 (249-411)||(10323138-10323301)
chr7 (156-203)||(10323079-10323126)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 88 - 464
Target Start/End: Original strand, 9130671 - 9131047
Alignment:
Q  88 gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130671 gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 9130770  T
Q  188 ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga 287  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  9130771 ctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaaga 9130870  T
Q  288 taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 387  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130871 taacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 9130970  T
Q  388 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130971 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 9131047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 88 - 464
Target Start/End: Original strand, 9122575 - 9122940
Alignment:
Q  88 gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122575 gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg 9122674  T
Q  188 ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga 287  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9122675 ctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctcccctttaaacggctaagactccatttcaaaga 9122774  T
Q  288 taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 387  Q
    ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122775 taacactttgatctcatc-----------gacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc 9122863  T
Q  388 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122864 catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa 9122940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 9123039 - 9123086
Alignment:
Q  463 aaacatcaaataaagacattggcagtaatatctacaagagtaactgat 510  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9123039 aaacatcaaataaagacattggcagtaataactataagagtaactgat 9123086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 9131146 - 9131193
Alignment:
Q  463 aaacatcaaataaagacattggcagtaatatctacaagagtaactgat 510  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9131146 aaacatcaaataaagacattggcagtaataactataagagtaactgat 9131193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 90 - 448
Target Start/End: Original strand, 24524526 - 24524885
Alignment:
Q  90 agcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgatctgc 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24524526 agcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgc 24524625  T
Q  189 tgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaagat 288  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  24524626 tgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaagat 24524725  T
Q  289 aacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc 388  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24524726 aacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc 24524825  T
Q  389 atattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa 448  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24524826 atattaaccaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa 24524885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 249 - 411
Target Start/End: Original strand, 10323138 - 10323301
Alignment:
Q  249 agggctcccctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttt 348  Q
    |||||||||||||||| ||| |||||| |||| | | || ||||  ||||| |||||||||||||||| |||||||||||||||||| |||| ||| |||    
T  10323138 agggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatgattttt 10323237  T
Q  349 t-cattcctagccttccaaagaacccaaataacggagtgccatattaaccaataacccctcttt 411  Q
      |||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  10323238 cgcatttctagccttccaaagaaccaaaataacggagtgccaaattaaccaataacccctcttt 10323301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 10323079 - 10323126
Alignment:
Q  156 gaaaaaagacatccagacggaccactgatctgctgcagctggactcct 203  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||||    
T  10323079 gaaaaatgacatccagacggaccacttatctgcttcagctggactcct 10323126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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