View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4416-Insertion-2 (Length: 502)
Name: NF4416-Insertion-2
Description: NF4416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4416-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 37790933 - 37791442
Alignment:
| Q |
8 |
tttatttctctctttagtggccttttttggattgattctcgcattattgattccccgctcctgtctttgatgattcttcccatttggccgatactcctct |
107 |
Q |
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| T |
37790933 |
tttatttctctctttagtgggcttttttggattgattctcgcaatattgattcctcgcttctgtctttgatgattcttcccatttggccgatactcctct |
37791032 |
T |
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| Q |
108 |
ctatagttgatggtgtgattgctttggtaa----attagtttgttttagtttattgttagggttaattttgtaataagcttaaaactttagcttcatg-- |
201 |
Q |
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| T |
37791033 |
ctatggttgatggtgtgattgctttggttacactattagtttgttttagtttattgttagggttaattttgtaataagcttaaaactttagcttcatgca |
37791132 |
T |
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| Q |
202 |
--ggtagtattttgagtctatattattgaatatgnnnnnnnnnnnnngtttgataaactctcgatgctgtttgttgttgcatcgtga-------gtatga |
292 |
Q |
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| T |
37791133 |
tgggtagtattttgagtctatattattgaatatgtttttcattttttgtttggcaaattctcgatgctatttgttgttgcatcgtgattcgtgagtataa |
37791232 |
T |
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| Q |
293 |
aggaagatgttagataataagattatatttataccattgaatcatttatgtttttaagttagtaaaattcattaagttttatatatattctcttgtaacc |
392 |
Q |
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| T |
37791233 |
agggagatgttagataataagattatacttataccattgagccatttatgtttctaagttagtaaaattcattaagttttatatatattctcttgtaacc |
37791332 |
T |
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| Q |
393 |
ttttaatattttatgtcatttgatattattggaactctatttgacttattattagaaccttttgtatgaaatggttgaggaagcctcaattctcacatga |
492 |
Q |
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| T |
37791333 |
ttttaatatgttatgttatttgatattattggaactctatttgacttattattagaaccttttgtatgaaatggttgaggaagcctcaattctcacatga |
37791432 |
T |
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| Q |
493 |
tcaccctgag |
502 |
Q |
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| T |
37791433 |
tcaccctgag |
37791442 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 24727049 - 24727086
Alignment:
| Q |
360 |
ttcattaagttttatatatattctcttgtaacctttta |
397 |
Q |
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| T |
24727049 |
ttcattatgttttatatatactctcttgtaacctttta |
24727086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 9365156 - 9365123
Alignment:
| Q |
363 |
attaagttttatatatattctcttgtaacctttt |
396 |
Q |
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| T |
9365156 |
attaggttttatatatattctcttgtaacctttt |
9365123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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