View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4417-Insertion-11 (Length: 201)
Name: NF4417-Insertion-11
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 42789067 - 42788874
Alignment:
| Q |
8 |
gaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatt |
107 |
Q |
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| T |
42789067 |
gaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatt |
42788968 |
T |
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| Q |
108 |
tgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg |
201 |
Q |
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| T |
42788967 |
tgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg |
42788874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 42798605 - 42798412
Alignment:
| Q |
8 |
gaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatt |
107 |
Q |
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| T |
42798605 |
gaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatt |
42798506 |
T |
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| Q |
108 |
tgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg |
201 |
Q |
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| T |
42798505 |
tgagtccacttttgaaggagtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg |
42798412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 34566741 - 34566633
Alignment:
| Q |
7 |
agaaagattgaagaagagatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaat |
106 |
Q |
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| T |
34566741 |
agaaagattaaggaaaagatatgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttggatgaat |
34566642 |
T |
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| Q |
107 |
ttgagtcca |
115 |
Q |
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| T |
34566641 |
atgagtcca |
34566633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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