View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4417-Insertion-2 (Length: 677)

Name: NF4417-Insertion-2
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4417-Insertion-2
NF4417-Insertion-2
[»] chr4 (10 HSPs)
chr4 (7-429)||(52245050-52245472)
chr4 (17-429)||(790552-790960)
chr4 (8-434)||(8015981-8016404)
chr4 (467-564)||(52245513-52245610)
chr4 (7-329)||(32105563-32105882)
chr4 (8-180)||(13434698-13434868)
chr4 (467-519)||(32105381-32105433)
chr4 (226-338)||(20808999-20809111)
chr4 (365-429)||(32105468-32105530)
chr4 (601-633)||(54136440-54136472)
[»] chr2 (12 HSPs)
chr2 (7-430)||(24003064-24003493)
chr2 (8-345)||(20125519-20125857)
chr2 (21-331)||(22999637-22999952)
chr2 (17-325)||(37787111-37787419)
chr2 (8-429)||(42757524-42757941)
chr2 (471-552)||(42757982-42758066)
chr2 (499-552)||(24002969-24003022)
chr2 (640-677)||(29078063-29078100)
chr2 (639-675)||(29076603-29076639)
chr2 (641-675)||(3607008-3607042)
chr2 (186-227)||(22381724-22381765)
chr2 (186-227)||(22913750-22913791)
[»] chr6 (5 HSPs)
chr6 (17-429)||(12522161-12522569)
chr6 (471-552)||(34188373-34188456)
chr6 (641-677)||(29467252-29467288)
chr6 (641-675)||(29465810-29465844)
chr6 (471-519)||(12522644-12522692)
[»] chr5 (19 HSPs)
chr5 (17-424)||(15029900-15030302)
chr5 (8-424)||(26227930-26228342)
chr5 (54-290)||(11077483-11077721)
chr5 (8-246)||(17361041-17361278)
chr5 (142-328)||(31253810-31253998)
chr5 (117-290)||(5325224-5325403)
chr5 (467-551)||(11077247-11077331)
chr5 (191-350)||(42478338-42478495)
chr5 (260-416)||(20127940-20128096)
chr5 (484-551)||(14622897-14622964)
chr5 (365-434)||(17361304-17361374)
chr5 (467-544)||(31251340-31251417)
chr5 (467-519)||(20127833-20127885)
chr5 (359-429)||(11077366-11077436)
chr5 (639-677)||(33957351-33957389)
chr5 (468-549)||(26228384-26228465)
chr5 (365-423)||(31251456-31251514)
chr5 (639-677)||(37966867-37966905)
chr5 (467-516)||(15579496-15579547)
[»] chr1 (14 HSPs)
chr1 (16-429)||(33473413-33473832)
chr1 (8-424)||(32907712-32908124)
chr1 (208-434)||(31038093-31038318)
chr1 (7-429)||(51995241-51995657)
chr1 (8-328)||(25646690-25647009)
chr1 (116-217)||(16814843-16814948)
chr1 (473-550)||(33473877-33473954)
chr1 (110-227)||(17888418-17888537)
chr1 (109-180)||(18467746-18467817)
chr1 (467-524)||(31038007-31038064)
chr1 (226-326)||(27572081-27572181)
chr1 (471-519)||(32908171-32908219)
chr1 (367-430)||(7054919-7054982)
chr1 (365-429)||(27572221-27572285)
[»] chr7 (20 HSPs)
chr7 (15-423)||(24688032-24688441)
chr7 (141-422)||(39605710-39605987)
chr7 (8-422)||(18995234-18995647)
chr7 (8-422)||(23846199-23846611)
chr7 (8-429)||(46857422-46857839)
chr7 (17-433)||(24056110-24056525)
chr7 (141-302)||(7194024-7194185)
chr7 (467-551)||(23846073-23846157)
chr7 (243-429)||(31135539-31135724)
chr7 (467-552)||(46857875-46857960)
chr7 (8-87)||(39605589-39605668)
chr7 (467-526)||(39606029-39606088)
chr7 (468-549)||(24688491-24688572)
chr7 (16-87)||(7194214-7194285)
chr7 (641-677)||(19543545-19543581)
chr7 (471-519)||(28086413-28086461)
chr7 (467-521)||(24056554-24056608)
chr7 (474-532)||(29127699-29127756)
chr7 (586-638)||(19543476-19543528)
chr7 (601-637)||(24446322-24446358)
[»] chr3 (19 HSPs)
chr3 (8-429)||(6512673-6513089)
chr3 (8-430)||(3330528-3330951)
chr3 (8-430)||(15819706-15820124)
chr3 (109-429)||(6472936-6473247)
chr3 (118-430)||(6748241-6748549)
chr3 (16-429)||(40474889-40475297)
chr3 (120-429)||(6473453-6473758)
chr3 (7-429)||(818039-818454)
chr3 (16-268)||(37978779-37979030)
chr3 (8-246)||(38111863-38112099)
chr3 (467-550)||(3330410-3330493)
chr3 (188-327)||(4611681-4611816)
chr3 (471-519)||(817942-817990)
chr3 (471-519)||(15820163-15820211)
chr3 (471-519)||(41696324-41696372)
chr3 (16-87)||(11985676-11985746)
chr3 (118-180)||(11985204-11985266)
chr3 (471-517)||(40475345-40475391)
chr3 (365-422)||(38111780-38111837)
[»] scaffold0044 (2 HSPs)
scaffold0044 (8-429)||(21810-22227)
scaffold0044 (467-551)||(22241-22325)
[»] chr8 (8 HSPs)
chr8 (121-429)||(34967647-34967954)
chr8 (226-337)||(22998337-22998448)
chr8 (16-176)||(13151654-13151814)
chr8 (226-338)||(7406474-7406586)
chr8 (467-551)||(34967989-34968071)
chr8 (467-519)||(13151368-13151420)
chr8 (8-87)||(34967531-34967610)
chr8 (471-521)||(35003967-35004017)
[»] scaffold0625 (1 HSPs)
scaffold0625 (8-422)||(1009-1422)
[»] scaffold0069 (2 HSPs)
scaffold0069 (147-327)||(19356-19538)
scaffold0069 (365-424)||(19260-19319)
[»] scaffold0006 (1 HSPs)
scaffold0006 (148-345)||(93080-93278)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 52245050 - 52245472
Alignment:
Q  7 actcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgt 106  Q
    ||||||||| |||||| |||||||||||||| || |||| |||| |||| ||||| ||||||| |||||||||||||||||   | |||||| ||| |||    
T  52245050 actcagacctgttgatcgaccatccctcgatatgaccttcaattggttt-gagttgctttctattggatttggctagaaatggtcgtgaaagctttctgt 52245148  T
Q  107 tgcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcac--cttcacgaagtttctttgtataacttgggggaggttt 204  Q
     |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||  ||  ||||||||||| |||||||||||||| ||||||    
T  52245149 cgcagcatagtgggttgtaggcgtggggttctgtatccgtgttggcggtagaatctctcacacctgtacgaagtttctctgtataacttgggg-aggttt 52245247  T
Q  205 cataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattac 304  Q
    |||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||      
T  52245248 cataattctcatcagtctacctaatgtcggactgcttggctcgaaagagacattatgcttgttgctttcgcaaggagatgttggtttttggattcattct 52245347  T
Q  305 atgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaat 404  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||        ||||||||||||||| |||||||||| |||||||||||||||||||    
T  52245348 atgttgacggtttgtccatacaccacttgttagacattcaccgatgttgtttttatttcattgtatcactcgattgggtttgaatacactttgtgtgaat 52245447  T
Q  405 tgattgggttaggtttatgtacccc 429  Q
    ||| | |||||||||||||| ||||    
T  52245448 tgactaggttaggtttatgtccccc 52245472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 790552 - 790960
Alignment:
Q  17 gttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatag 116  Q
    ||||||||||||||||||||| ||||||| |||| | ||||||||  |||||| |||||||||||||||||   | |||| | ||| ||| ||| ||| |    
T  790552 gttgattgaccatccctcgatctggccttcaattggatttgagttgatttctattggatttggctagaaatggtcgtgaa-gctttctgtcgcaacatgg 790650  T
Q  117 tgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctcat 216  Q
     |||||||||||||||| || || ||||||||||||||| ||||||| ||||||||||||||||     ||||||||||||||||||||| |||||||||    
T  790651 cgggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctcccaccttcacgaagtttggcactataacttgggggaggtttcaaaatcctcat 790749  T
Q  217 cagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtt 316  Q
    ||||||   ||||||||||||| ||||||| ||| |||  |||||||||||||| || ||||||| |||||||| ||  ||||||| | |||||||||||    
T  790750 cagtctt--tgatgttggactgtttggctcgaaaaagatgttatgcttgttgctgtcacaaggagttgttggttcttgtatccatttcgtgttgacggtt 790847  T
Q  317 tgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttag 416  Q
     ||||||| ||| || |||||| |||| ||||||        ||||| |||||||||||||||| ||||| |||| ||||||||| ||||| || |||||    
T  790848 ggtccatataccgcaagttagacattccccggtgttgtttttatttctttgtatcacccgattgtgttggcatactctttgtgtggattgactgagttag 790947  T
Q  417 gtttatgtacccc 429  Q
    |||||||| ||||    
T  790948 gtttatgtccccc 790960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 8016404 - 8015981
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||| ||||||||||||||||| | | ||| |||| | ||||||||  |||||| ||| |||||||||||||   | ||||   |||||||     
T  8016404 ctcagactcgttcattgaccatccctcgatctagtcttcaattggatttgagttgttttctattggttttggctagaaatggtcgtgaacc-tttttgtc 8016306  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||||||||||||||  |||||||  |  | |||||| |||||||||||||    
T  8016305 gcagcatagtgggttgtaggcatggggttatgtatccgtgttggtggtcgaatctctcaccttc--gaagtttggcactatataacatgggggaggtttc 8016208  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | | || ||||||||||   |||||||||| || ||||||| |||||||| |||||||||||| | |||||||||| |||||||| || ||||||||       
T  8016207 aaattcttcatcagtctt--tgatgttggattgtttggctcgaaagagacgttatgcttgttgatgtcgcaaggagttgttggttcttggatccattttg 8016110  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    |||||||| || |||| |||||  |  ||| || || ||||||||        ||||  ||||||||||| |||||||||| |||||||||||||| |||    
T  8016109 tgttgacgattggtccgtacactgctagttggacatccaccggtgttgtgtttatttatttgtatcacccaattgggttggcatacactttgtgtggatt 8016010  T
Q  406 gattgggttaggtttatgtaccccagttc 434  Q
    || |   |||||||||||| |||||||||    
T  8016009 gactaatttaggtttatgtcccccagttc 8015981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 467 - 564
Target Start/End: Original strand, 52245513 - 52245610
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtcatcggtctctggcc 564  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  52245513 aataatatatatgaatacctgacatagattggaatctacaagacattccaacttttgaaccgttttctgttccttttttatgtcatcggtctctggcc 52245610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 32105882 - 32105563
Alignment:
Q  7 actcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgt 106  Q
    |||||| | |||||||||| ||||||||||| |||| || |||| | |||||||| |||||   |||||||||||||||||   | |||| | ||  |||    
T  32105882 actcagtctcgttgattgatcatccctcgatctggctttcaattggatttgagttgctttccgttggatttggctagaaatggtcgtgaa-gcttactgt 32105784  T
Q  107 tgcagcatagtgggtt-gtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttc 205  Q
     |||||||| |||||| |||||||||||  |  | ||||||||||||||| ||||||| ||||||||||||||||     |||||||||||| | |||||    
T  32105783 cgcagcataatgggtttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactataacttgggg-atgtttc 32105685  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | ||||| |||||||||  |||||||||||||| ||| ||| ||||||||  | ||||||||||| |||||||||| |||||||| || | || ||| |     
T  32105684 aaaatccgcatcagtct--ctgatgttggactgtttgtctcgaaagagacgctttgcttgttgctgtcgcaaggagttgttggttcttggttcaatttcg 32105587  T
Q  306 tgttgacggtttgtccatacacca 329  Q
    ||||||||| | ||||||||||||    
T  32105586 tgttgacggatggtccatacacca 32105563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 13434698 - 13434868
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||||||||||||||||||||| |||| || |||| | ||||||||||||| || | |||||||||||||||  || || ||| |||  ||     
T  13434698 ctcagactcgttgattgaccatccctcgatctggctttcaattggatttgagtttctttttattagatttggctagaaatggccgtg-aagctttcggtc 13434796  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt 180  Q
    |||||||||||||||||||||||||| || || ||||||||||||||   ||||||||| ||||| |||||||    
T  13434797 gcagcatagtgggttgtaggcgtggg-ttctgtatccgtgttggcggacaaatctctcatcttcatgaagttt 13434868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 32105433 - 32105381
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  32105433 aataatatatatgagcacctgacatagaatggaatctgcaagacactccaact 32105381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 20808999 - 20809111
Alignment:
Q  226 tgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatac 325  Q
    ||||||||||||| ||| |||||||||||| |||  ||||||||| | |||||||| ||||||||||| ||  | ||   |||||| |||| ||||||||    
T  20808999 tgatgttggactgtttgcctcaaaagagacgttagacttgttgctgttgcaaggagttgttggtttttggactcgttctgtgttgatggttggtccatac 20809098  T
Q  326 accacatgttaga 338  Q
    ||| ||| |||||    
T  20809099 accgcattttaga 20809111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 32105530 - 32105468
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgtacccc 429  Q
    ||||||||| |||||||||||| ||||||  | |||| ||||| |||||||||||||||| ||||    
T  32105530 ttgtatcactcgattgggttggcatacac--tctgtggattgactgggttaggtttatgtccccc 32105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 633
Target Start/End: Complemental strand, 54136472 - 54136440
Alignment:
Q  601 gctaaattgctatttttgtcctttaactattta 633  Q
    |||||||||| ||||||||||||||||||||||    
T  54136472 gctaaattgcaatttttgtcctttaactattta 54136440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 7 - 430
Target Start/End: Complemental strand, 24003493 - 24003064
Alignment:
Q  7 actcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgt 106  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||| |||||||||| ||||||| ||||||||| |||||||  || | || | ||| | |    
T  24003493 actcagacccgttgattgaccatcccttgatctggccttcaattggttttgagttgctttctattggatttggttagaaatggccgtcaa-gctttctat 24003395  T
Q  107 tgcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggttt 204  Q
     ||| |||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||  || | |||||||||||||| ||||    
T  24003394 cgcatcataatgggttgtaggcgtggggttttgtatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttggggga-gttt 24003296  T
Q  205 cataatcctcatcagtctac------ctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatc 298  Q
    || |||||||||| ||||||      |||||||||||||| ||||||| |||||||| ||||| |||||||| |||||||||| |||||||| || | ||    
T  24003295 caaaatcctcatcggtctacctgatgctgatgttggactgtttggctcgaaagagacgttatgtttgttgctgtcgcaaggagttgttggttcttggttc 24003196  T
Q  299 cattacatgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgt 398  Q
    ||||   || |||||||||||||||||||||||||||||| | |||| ||||        ||||| ||| |||||||||||||||||| |||||||||||    
T  24003195 cattctgtgctgacggtttgtccatacaccacatgttagacactcactggtgttgtttttatttctttgcatcacccgattgggttggcatacactttgt 24003096  T
Q  399 gtgaattgattgggttaggtttatgtacccca 430  Q
    ||| ||||| |||||||||||||||| |||||    
T  24003095 gtggattgactgggttaggtttatgtccccca 24003064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 20125519 - 20125857
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    |||| |||||||| ||||||||| | |||| | ||||| |||| ||||| ||||  |||||| ||||||||||||||||| ||| ||||   ||| ||||    
T  20125519 ctcatacccgttggttgaccatctcacgatctagccttcaattggttttaagttgttttctattggatttggctagaaatgaccgtgaacc-tttctgtt 20125617  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    |||||| ||||| ||||  | ||| | || || |||||||||||| ||||||||| |||||||||||||||||  || | ||||||||||||||||||||    
T  20125618 gcagcaaagtggattgtctgtgtgaggttttgtatccgtgttggcagtagaatctttcaccttcacgaagtttggctctatataacttgggggaggtttc 20125717  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | ||||||||||||||||| ||||||||||||  ||||||  |||||||| |||| ||||||  | |||||||||| | ||| || || |||||||| |     
T  20125718 aaaatcctcatcagtctacatgatgttggactatttggcttgaaagagacgttatacttgttcttgtcgcaaggagttcttgattcttagatccattccg 20125817  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcac 345  Q
    ||||||||||||||||||| ||| ||||||||| ||||||    
T  20125818 tgttgacggtttgtccataaaccgcatgttagacattcac 20125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 22999952 - 22999637
Alignment:
Q  21 attgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatagtggg 120  Q
    |||||||||||||||||||||| || |||| |||||||||| || |||   |||||||| |||||||     |||| | || |||| ||||||||||||     
T  22999952 attgaccatccctcgatttggctttcaattggttttgagttgctatctgtgggatttggatagaaatggtggtgaa-gcttattgtcgcagcatagtgga 22999854  T
Q  121 ttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctt--tgtataacttgggggaggtttcataatcctcatca 218  Q
    |||| |||||||| || || ||  ||||||| |||||||||| ||||||||||||||||| ||  | |||||||| |||||||||||| |||||||||||    
T  22999853 ttgttggcgtggggttttgtatttgtgttggtggtagaatctttcaccttcacgaagtttgttactatataacttaggggaggtttcaaaatcctcatca 22999754  T
Q  219 gtctacctgat----gttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacgg 314  Q
     |||||||| |    |||||| || ||  ||| ||| |||| |||||||||||| |   |||| ||| |||||||| || ||| | || |||||||||||    
T  22999753 ttctacctgtttgaagttggattgtttcactcgaaatagacgttatgcttgttgttgctgcaacgagttgttggttcttagattcgttccatgttgacgg 22999654  T
Q  315 tttgtccatacaccaca 331  Q
    || || |||||||||||    
T  22999653 ttggttcatacaccaca 22999637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 37787419 - 37787111
Alignment:
Q  17 gttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt-gcagcata 115  Q
    ||||||||||| |||| |||| | ||||| |||| | |||||||| ||||||| | |||||||||||||||   | |||| | ||| |||| ||| ||||    
T  37787419 gttgattgaccgtcccacgatctagccttcaattggatttgagttgctttctattagatttggctagaaatggtcgtgaa-gctttctgtttgcaacata 37787321  T
Q  116 gtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt----ctttgtataacttgggggaggtttcataatc 211  Q
       ||||||||||||||| || |  ||| ||||||||||| |||| | |||||||||||||||||    |||||  ||||||||||||||||||| ||||    
T  37787320 acaggttgtaggcgtggggttctatatctgtgttggcggttgaatttatcaccttcacgaagtttggcactttg--taacttgggggaggtttcaaaatc 37787223  T
Q  212 ctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttga 311  Q
    || |||||| ||  ||||||||||||  |||||   ||||||||  ||||||||||||| |||||||||| || ||||  || |||||||| |||| |||    
T  37787222 cttatcagttta--tgatgttggactctttggcatgaaagagacgctatgcttgttgctgtcgcaaggagttggtggtccttggatccatttcatgatga 37787125  T
Q  312 cggtttgtccatac 325  Q
    ||||| ||||||||    
T  37787124 cggttggtccatac 37787111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 42757524 - 42757941
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| ||||||||||||||||||| || ||| ||| |||    |||||||| ||||||| |||| ||||||||||||  ||||||| |  || |||     
T  42757524 ctcagactcgttgattgaccatccctcaatctggtcttcaatggaatttgagttgctttctattggagttggctagaaatgcccatgaa-gccttatgtc 42757622  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctt-----tgtataac-ttgggggagg 201  Q
    | |||||||  ||||||||||||| | ||  | ||||||||||||||| |||||||| ||  |||||||||   ||     | ||||||  ||| ||| |    
T  42757623 gtagcatagcaggttgtaggcgtgagattccgtatccgtgttggcggtcgaatctctaactgtcacgaagtagtttggcactatataacactggtggatg 42757722  T
Q  202 tttcataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccat 301  Q
    ||||| ||| | |||||||||   ||||||||||||| ||||||| ||||       |||||||||||| | ||||||||||||||||| ||  ||| ||    
T  42757723 tttcaaaattcgcatcagtct--ttgatgttggactgtttggctcgaaag-------atgcttgttgctgttgcaaggagctgttggttcttgtatctat 42757813  T
Q  302 tacatgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtg 401  Q
      | |||| || ||| ||||||||||| || |||||| || ||| ||||         |||| |||||||||||| ||||||||| ||||||||||||||    
T  42757814 ctcgtgtttacagttggtccatacaccgcacgttagacatccacaggtgttgttattttttctttgtatcacccgcttgggttggcatacactttgtgtg 42757913  T
Q  402 aattgattgggttaggtttatgtacccc 429  Q
     ||||| ||||| |||||||||| ||||    
T  42757914 gattgactgggtcaggtttatgtccccc 42757941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 42757982 - 42758066
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact---tttggaccgttttccgttccttttttatgtcat 552  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||    |||||| || ||| |||||||| |||||||||    
T  42757982 atatatatgagcacctgacataaattggaatctgcaagacattccaactctgattggactgtcttctgttcctttgttatgtcat 42758066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Complemental strand, 24003022 - 24002969
Alignment:
Q  499 aatctgcaagacattccaacttttggaccgttttccgttccttttttatgtcat 552  Q
    ||||||||| ||||| |||||||||||| ||||||  |||||||||||||||||    
T  24003022 aatctgcaaaacatttcaacttttggactgttttctattccttttttatgtcat 24002969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 677
Target Start/End: Complemental strand, 29078100 - 29078063
Alignment:
Q  640 ataattaaaatttgttccgttttgatattttaagttta 677  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29078100 ataattaaaatttgttccgttttggtattttaagttta 29078063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 675
Target Start/End: Original strand, 29076603 - 29076639
Alignment:
Q  639 cataattaaaatttgttccgttttgatattttaagtt 675  Q
    ||||||| |||||||||||||||||||||||||||||    
T  29076603 cataatttaaatttgttccgttttgatattttaagtt 29076639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 641 - 675
Target Start/End: Complemental strand, 3607042 - 3607008
Alignment:
Q  641 taattaaaatttgttccgttttgatattttaagtt 675  Q
    |||||||||||| ||||||||||||||||||||||    
T  3607042 taattaaaatttattccgttttgatattttaagtt 3607008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 22381724 - 22381765
Alignment:
Q  186 tataacttgggggaggtttcataatcctcatcagtctacctg 227  Q
    |||||||| |||||||||||| ||||||||||| ||||||||    
T  22381724 tataacttaggggaggtttcaaaatcctcatcattctacctg 22381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 22913750 - 22913791
Alignment:
Q  186 tataacttgggggaggtttcataatcctcatcagtctacctg 227  Q
    |||||||| |||||||||||| ||||||||||| ||||||||    
T  22913750 tataacttaggggaggtttcaaaatcctcatcattctacctg 22913791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 12522161 - 12522569
Alignment:
Q  17 gttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatag 116  Q
    ||||||||||||||||||||| ||||||| |||| | |||||||| ||||| | |||||||||||||||||   | |||| | ||| ||| ||||||| |    
T  12522161 gttgattgaccatccctcgatctggccttcaattggatttgagttgctttccattggatttggctagaaatggtcgtgaa-gctttctgtcgcagcatgg 12522259  T
Q  117 tgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctcat 216  Q
     |||||||||||||||| || || ||||||||||||||| ||||||||||| ||||||||||||     ||||||||||||||||||||| ||||||||     
T  12522260 cgggttgtaggcgtgggttt-tgtatccgtgttggcggtcgaatctctcactttcacgaagtttggcactataacttgggggaggtttcaaaatcctcac 12522358  T
Q  217 cagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtt 316  Q
    ||||||   ||||||||||||| ||||||| |||||||  |||||||||||| | |||||||||| |||||||| || |||||||| | |||||||||||    
T  12522359 cagtctt--tgatgttggactgtttggctcgaaagagatgttatgcttgttgttgtcgcaaggagttgttggttcttggatccatttcgtgttgacggtt 12522456  T
Q  317 tgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttag 416  Q
     ||||||||||| || |||||| ||||||  |||        ||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  12522457 ggtccatacaccgcaagttagacattcactagtgttgtttttatttctttgtatcacccgattgggttggcatacactttgtgtggattgactgggttag 12522556  T
Q  417 gtttatgtacccc 429  Q
    |||||||| ||||    
T  12522557 gtttatgtccccc 12522569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 34188456 - 34188373
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaactt--ttggaccgttttccgttccttttttatgtcat 552  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||  |||||| || |||  |||||||||||||||||    
T  34188456 atatatatgagcatctgacatagattggaatctgcaagacattcaaactttgttggactgtcttctattccttttttatgtcat 34188373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 677
Target Start/End: Complemental strand, 29467288 - 29467252
Alignment:
Q  641 taattaaaatttgttccgttttgatattttaagttta 677  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29467288 taattaaaatttgttccgtttagatattttaagttta 29467252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 641 - 675
Target Start/End: Original strand, 29465810 - 29465844
Alignment:
Q  641 taattaaaatttgttccgttttgatattttaagtt 675  Q
    ||||||||||||||||||||||| |||||||||||    
T  29465810 taattaaaatttgttccgttttggtattttaagtt 29465844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 12522644 - 12522692
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    |||||||| || |||||||||||| |||||| |||||| ||||||||||    
T  12522644 atatatataagcacctgacatagactggaatttgcaagtcattccaact 12522692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 15030302 - 15029900
Alignment:
Q  17 gttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatag 116  Q
    ||||||||||||||||||||| ||||||| |||| | |||||||| ||||||| |||||||||||||||||   | |||| | ||| ||| ||||||| |    
T  15030302 gttgattgaccatccctcgatctggccttcaattggatttgagttgctttctattggatttggctagaaatggtcgtgaa-gctttctgtcgcagcatgg 15030204  T
Q  117 tgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctcat 216  Q
    ||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||     ||||||||||||||||||||| |||||||||    
T  15030203 tgggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttgacactataacttgggggaggtttcaaaatcctcat 15030105  T
Q  217 cagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtt 316  Q
    ||||||   ||||||||||||| ||||||| |||||||| |||||||||||| | |||||||||| |||||||| || ||||||||   |||||||||||    
T  15030104 cagtctt--tgatgttggactgtttggctcgaaagagacgttatgcttgttgttgtcgcaaggagttgttggttcttggatccattttgtgttgacggtt 15030007  T
Q  317 tgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttag 416  Q
     ||||||||||| || |||||| |||||||  ||        ||||| |||||||||||||||||||| | |||||||||||||| ||||| || ||||     
T  15030006 ggtccatacaccgcaagttagacattcaccaatgttgtttttatttctttgtatcacccgattgggtt-gcatacactttgtgtggattgactgagttat 15029908  T
Q  417 gtttatgt 424  Q
    ||||||||    
T  15029907 gtttatgt 15029900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 26227930 - 26228342
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    |||||||||||| ||||||||||||||||  |||| || || |  |||||||||  |||||| |||||| ||||||||||   | |||| | | | |||     
T  26227930 ctcagacccgttaattgaccatccctcgacctggcattcaactgtttttgagttgttttctattggatt-ggctagaaatggtcgtgaa-gctctctgtc 26228027  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt-ctttgtataacttgggggaggtttca 206  Q
    ||||||||| |||||||||| ||||| || || ||||||| |||||||||||||| | |||| || ||| ||  || | ||||||||||||||| |||||    
T  26228028 gcagcatagcgggttgtaggtgtggggttctgtatccgtgatggcggtagaatcttttacctgcatgaatttggctctatataacttgggggagatttca 26228127  T
Q  207 taatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacat 306  Q
     ||||||||||||||||||||||||||||||  ||||||| |||||||  || ||||||||| | | |||| ||| |||||||| || ||||||||   |    
T  26228128 aaatcctcatcagtctacctgatgttggactatttggctcgaaagagatgttgtgcttgttgttgttgcaatgagttgttggttcttggatccattcagt 26228227  T
Q  307 gttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattg 406  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||        | ||  |||||| ||||||||||||||  ||||||  |||||| ||||    
T  26228228 gttgacggtttgtccatacactacaagttagacattcactggtgttgttttta-ttgtttgtattacccgattgggttgacatacac--tgtgtggattg 26228324  T
Q  407 attgggttaggtttatgt 424  Q
    | ||||||||||||||||    
T  26228325 actgggttaggtttatgt 26228342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 54 - 290
Target Start/End: Complemental strand, 11077721 - 11077483
Alignment:
Q  54 tttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatagtgggttgtaggcgtgggcttatg--catccgtgttgg 151  Q
    ||||| || ||||||| |||||||||||||||||  ||||||| | |||  || ||||||||| ||||||||| |||||| || ||  ||||||||||||    
T  11077721 tttgaattgctttctattggatttggctagaaatggccatgaa-gctttccgtcgcagcatag-gggttgtagacgtggggttctgatcatccgtgttgg 11077624  T
Q  152 cggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactgcttggctcaaa 249  Q
    |||||||||||||||||||||||||||||  ||   ||||||||||  | ||||||| |||||||||| ||||  |||||||||||||| ||||||| ||    
T  11077623 cggtagaatctctcaccttcacgaagtttggctccatataacttggatgcggtttcaaaatcctcatctgtctgtctgatgttggactgtttggctcgaa 11077524  T
Q  250 agagacattatgcttgttgctttcgcaaggagctgttggtt 290  Q
    |||||||||| |||||||||| |||||||||| ||||||||    
T  11077523 agagacattaggcttgttgctgtcgcaaggagttgttggtt 11077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 17361041 - 17361278
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||||||||||||||| | ||| |||| || |||| | |||||||| |||| || |||||||||||||||||  || || ||| |||||||     
T  17361041 ctcagactcgttgattgaccatccattgatctggctttcaattggatttgagttgctttatattggatttggctagaaatggccgtg-aagctttttgtc 17361139  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||||||||   ||||||| | ||||| || || |||| |||| ||||| ||||||||||||||||||||||||  |  | ||||||||| ||||||||||    
T  17361140 gcagcataacaggttgtatgtgtggggttttgtatccatgttcgcggtcgaatctctcaccttcacgaagtttgacactatataacttgagggaggtttc 17361239  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctc 246  Q
    | ||||||||||||  ||  ||||||||||||| |||||||    
T  17361240 aaaatcctcatcag--tatttgatgttggactgtttggctc 17361278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 31253998 - 31253810
Alignment:
Q  142 tccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactgc 239  Q
    |||||||||||||||||| ||||||||||||||||||||  || | |||| |||||  | ||||||| |||||||||| ||||   |||||||||||||     
T  31253998 tccgtgttggcggtagaagctctcaccttcacgaagtttgactctatatatcttggatgcggtttcaaaatcctcatcggtctgtttgatgttggactgt 31253899  T
Q  240 ttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacacc 328  Q
    ||||||| | |||||  ||| |||||||| | |||||||||| |||||||| || ||| |||| | ||||||||||||||| |||||||    
T  31253898 ttggctcgatagagatgttaggcttgttgttgtcgcaaggagttgttggttcttggattcattccgtgttgacggtttgtcaatacacc 31253810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 117 - 290
Target Start/End: Original strand, 5325224 - 5325403
Alignment:
Q  117 tgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctt--tgtataacttgggggaggtttcataatcctc 214  Q
    ||||||||||||||||| || |  |||| |||||||||| ||||||||||||||||||||||||  |  | ||||||||  ||||||||||| |||| ||    
T  5325224 tgggttgtaggcgtggggttctatatccatgttggcggttgaatctctcaccttcacgaagtttggtactatataacttaagggaggtttcaaaatcttc 5325323  T
Q  215 atcagtctac----ctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggtt 290  Q
    || | |||||    ||||||||||| || |||||||||||||||| |||||||||||| | | | |||||| ||||||||    
T  5325324 attattctacctgtctgatgttggattgtttggctcaaaagagacgttatgcttgttgttgttgtaaggagttgttggtt 5325403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 467 - 551
Target Start/End: Complemental strand, 11077331 - 11077247
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtca 551  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||  ||||||  ||||||||||||||||    
T  11077331 aataatatatatgagtacctaacatagactggaatctgcaagacattctatcttttggattgttttctattccttttttatgtca 11077247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 42478495 - 42478338
Alignment:
Q  191 cttgggggaggtttcataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggtt 290  Q
    |||||||||||||||| ||| |||||||||||   ||||||||||||| ||| ||| ||| |||| |||| ||||||||| ||| ||| || ||||||||    
T  42478495 cttgggggaggtttcaaaattctcatcagtctt--tgatgttggactgtttgactcgaaaaagacgttatacttgttgctgtcgtaagaagttgttggtt 42478398  T
Q  291 ttttgatccattacatgttgacggtttgtccatacaccacatgttagaaattcaccggtg 350  Q
     || ||||||||   ||||||||||| ||||||||||| ||   |||| |||||||||||    
T  42478397 cttggatccattttgtgttgacggttggtccatacaccgcacaatagacattcaccggtg 42478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 416
Target Start/End: Complemental strand, 20128096 - 20127940
Alignment:
Q  260 tgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnna 359  Q
    ||||||||||| |||||||||| |||||||| ||  ||||||| | ||||||||||| ||||||||||| ||  ||||| ||| | |||||        |    
T  20128096 tgcttgttgctatcgcaaggagttgttggttcttgaatccatttcgtgttgacggttggtccatacaccgcacattagatatttatcggtgttgttttta 20127997  T
Q  360 tttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttag 416  Q
    |||| |||||| || ||||||||||||  ||||||||||||| ||||| || |||||    
T  20127996 tttctttgtattactcgattgggttggcttacactttgtgtggattgactgagttag 20127940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Complemental strand, 14622964 - 14622897
Alignment:
Q  484 cctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtca 551  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||  |||||| |||||||||||||||||    
T  14622964 cctgacatagactggaatctgcaagacattccatcttttagattgttttctgttccttttttatgtca 14622897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 17361304 - 17361374
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgt-accccagttc 434  Q
    ||||||||||||||||||||||  |||||||| |||| ||||| |||||||||||||||| ||||||||||    
T  17361304 ttgtatcacccgattgggttggcctacactttatgtggattgactgggttaggtttatgtcaccccagttc 17361374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 544
Target Start/End: Complemental strand, 31251417 - 31251340
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttt 544  Q
    ||||||||||||||||||||||||||||  ||| |||||| || |||||| ||||||||  ||||||  |||||||||    
T  31251417 aataatatatatgagtacctgacatagaccggagtctgcaggatattccatcttttggattgttttctattccttttt 31251340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 20127885 - 20127833
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    |||||||| |||||| |||||||||||| |||||||| |||||||||||||||    
T  20127885 aataatatttatgagcacctgacatagactggaatctacaagacattccaact 20127833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 11077436 - 11077366
Alignment:
Q  359 atttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgtacccc 429  Q
    ||||| |||||||||  | ||| ||||| |||||||||||||| ||||| |||||||||||||||| ||||    
T  11077436 atttctttgtatcacttgtttgtgttggcatacactttgtgtggattgactgggttaggtttatgtccccc 11077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 677
Target Start/End: Complemental strand, 33957389 - 33957351
Alignment:
Q  639 cataattaaaatttgttccgttttgatattttaagttta 677  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  33957389 cataattaaaatttattccgttttgatattttaagttta 33957351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 549
Target Start/End: Original strand, 26228384 - 26228465
Alignment:
Q  468 ataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgt 549  Q
    |||||||||||||| |||||||||| | |  ||| ||||||||||| ||||||||  || ||||||  ||||||||||||||    
T  26228384 ataatatatatgagcacctgacataaactaaaatatgcaagacatttcaacttttaaactgttttctattccttttttatgt 26228465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 31251514 - 31251456
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatg 423  Q
    |||||||||| | ||||||||  |||||||||||||| ||||| || ||||||||||||    
T  31251514 ttgtatcacctgtttgggttgacatacactttgtgtggattgactgtgttaggtttatg 31251456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 639 - 677
Target Start/End: Original strand, 37966867 - 37966905
Alignment:
Q  639 cataattaaaatttgttccgttttgatattttaagttta 677  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  37966867 cataattaaaatttgttccgttttggtattttaaattta 37966905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 15579547 - 15579496
Alignment:
Q  467 aataatatatatgagtacct--gacatagattggaatctgcaagacattcca 516  Q
    ||||||||||||||||||||  ||||||||  |||||||| |||||||||||    
T  15579547 aataatatatatgagtacctctgacatagaccggaatctgtaagacattcca 15579496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 1e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 33473413 - 33473832
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcata 115  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||   | |||| | ||| ||| ||||||||    
T  33473413 cgttgattgaccattcctcgatttggccttcaattggttttgagttgctttctattggatttggctagaaatggtcgtgaa-gctttctgtcgcagcata 33473511  T
Q  116 gtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcct 213  Q
    ||||||||||||| |||| || || ||| |||||||||||||||||||| ||||||| |||||||  || | ||||||||||  ||||||||| |||||     
T  33473512 gtgggttgtaggcatggggttctgtatctgtgttggcggtagaatctctgaccttcatgaagtttggctctatataacttggatgaggtttcaaaatcca 33473611  T
Q  214 catcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctg-----ttggttttttgatccattacatgt 308  Q
    ||||| |||||||||||||||| || |||||||||||||||| | |||||||||| | |||||||||| ||     |||||| || |||||||| | |||    
T  33473612 catcactctacctgatgttggattgtttggctcaaaagagacgtcatgcttgttgttgtcgcaaggagttgagttgttggttcttggatccattccgtgt 33473711  T
Q  309 tgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgat 408  Q
    |||||||||||||||||||  ||||||||| |||||||||||        ||||| |||||||||||||||||  ||| ||||||| ||| || |||||     
T  33473712 tgacggtttgtccatacactgcatgttagacattcaccggtgttgtttttatttctttgtatcacccgattggactggcatacactatgtatggattgac 33473811  T
Q  409 tgggttaggtttatgtacccc 429  Q
    ||||||| |||||||| ||||    
T  33473812 tgggttaagtttatgtccccc 33473832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 32907712 - 32908124
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| ||||||||||| ||||||||||||||| || |||| | |||||||| ||||||| | | |||||||||||||   | |||| | |||  ||     
T  32907712 ctcagactcgttgattgactatccctcgatttggctttcaattggatttgagttgctttctattagttttggctagaaatggtcgtgaa-gctttcagtc 32907810  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcat 207  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||     |||||||| ||||||||||||     
T  32907811 gcagcataacgggttgtaggcgtggg-ttatgtatccgtgttggcggacgaatctctcaccttcacgaagtttggcactataactttggggaggtttcaa 32907909  T
Q  208 aatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatg 307  Q
    |||||||| ||||||   ||||||| || || ||||||| |  |||||||||||||||||| | |||||||||| ||| |||| || |||||||| | ||    
T  32907910 aatcctcaccagtctt--tgatgttagattgtttggctcgatggagacattatgcttgttgttgtcgcaaggagttgtcggttcttggatccatttcgtg 32908007  T
Q  308 ttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattga 407  Q
    ||||||||| ||||||||||| || |||||| |||||||| ||        ||||| |||||||||||| ||||||||  |||||||||||||| |||||    
T  32908008 ttgacggttggtccatacaccgcaagttagacattcaccgatgttgtttttatttctttgtatcacccggttgggttgacatacactttgtgtggattga 32908107  T
Q  408 ttgggttaggtttatgt 424  Q
     ||||||||||||||||    
T  32908108 ctgggttaggtttatgt 32908124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 208 - 434
Target Start/End: Complemental strand, 31038318 - 31038093
Alignment:
Q  208 aatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatg 307  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||| || ||||| || |||||||| | ||    
T  31038318 aatcctcatcagtctacctgatgttggactgtttggctcgaaagagacattatgcttgttgttgtcgcaaggagttgctggttcttggatccattgcgtg 31038219  T
Q  308 ttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattga 407  Q
     ||||| |||||||||||||| | ||||||  ||||||| |||        ||||| |||||||||||| ||||||||| |||||||||||||  |||||    
T  31038218 ctgacgctttgtccatacacctcttgttaggcattcaccagtgttgtttttatttctttgtatcacccgtttgggttggcatacactttgtgtcgattga 31038119  T
Q  408 ttgggttaggtttatgtaccccagttc 434  Q
     | |||||||||||||| |||||||||    
T  31038118 ct-ggttaggtttatgttccccagttc 31038093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 429
Target Start/End: Complemental strand, 51995657 - 51995241
Alignment:
Q  7 actcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgt 106  Q
    |||||| | |||||||||||||||||||||| |||| || |||| | |||||||| ||||||  |||||||||||||||||   | |||| | ||  |||    
T  51995657 actcagtctcgttgattgaccatccctcgatctggctttcaattggatttgagttgctttctgttggatttggctagaaatggtcgtgaa-gcttactgt 51995559  T
Q  107 tgcagcatagtgggtt-gtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttc 205  Q
     ||| |||| |||||| |||||||||||  |  | ||||||||||||||| ||||||| ||||||||||||||||     |||||||||||| | |||||    
T  51995558 cgcatcataatgggtttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactataacttgggg-atgtttc 51995460  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | ||||| |||||||||  ||||||||||| || ||| ||| ||||||||  | ||||||||||| |||||||||| |||||||| || | || ||| |     
T  51995459 aaaatccgcatcagtct--ctgatgttggattgtttgtctcgaaagagacgctttgcttgttgctgtcgcaaggagttgttggttcttggttcaatttcg 51995362  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    ||||||||| | |||||||||||| || ||||  || || |||||        ||||  |||||||||||||||||||||| ||||||  | |||| |||    
T  51995361 tgttgacggatggtccatacaccatattttaggcatccatcggtgttgttttaattt-tttgtatcacccgattgggttggcatacac--tctgtggatt 51995265  T
Q  406 gattgggttaggtttatgtacccc 429  Q
    || |||||||||||||||| ||||    
T  51995264 gactgggttaggtttatgtccccc 51995241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 25647009 - 25646690
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||||||||||||||||| ||| ||||||| |||| | |||||| | ||||||| |||||||||||||||||     |||| | ||| ||||    
T  25647009 ctcagactcgttgattgaccatcccttgatctggccttcaattggatttgagctgctttctattggatttggctagaaatggatgtgaa-gctttctgtt 25646911  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||||||| | |||||||||| ||| | || || ||  ||||||||||| | || |||||||||||||||||||  |  | ||||||||||||||||||||    
T  25646910 gcagcatcgcgggttgtaggagtgtggttctgtatttgtgttggcggtcggatttctcaccttcacgaagtttagcactatataacttgggggaggtttc 25646811  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||||||||| ||||   |||||||||| |  || |||| ||||||||  ||||||||||||| |||||||||| |||||||| || |||| ||  |     
T  25646810 aaaatcctcatcggtctt--tgatgttggattttttagctcgaaagagacgctatgcttgttgctgtcgcaaggagttgttggttcttggatctatctcg 25646713  T
Q  306 tgttgacggtttgtccatacacc 328  Q
    |||||| |||| |||||||||||    
T  25646712 tgttgatggttggtccatacacc 25646690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 16814843 - 16814948
Alignment:
Q  116 gtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt----ctttgtataacttgggggaggtttcataatc 211  Q
    |||||||||||||||||| || || |||||||||| |||| ||||| |||||||||||||| |||    || | ||||||||| ||||||||||| ||||    
T  16814843 gtgggttgtaggcgtggggttctgtatccgtgttgacggtcgaatccctcaccttcacgaaatttggtactatatataacttgagggaggtttcaaaatc 16814942  T
Q  212 ctcatc 217  Q
    ||||||    
T  16814943 ctcatc 16814948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 550
Target Start/End: Original strand, 33473877 - 33473954
Alignment:
Q  473 atatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtc 550  Q
    ||||||||| || ||||||||| |||||| ||||||||||||||||||||| || ||||||  ||||||||| |||||    
T  33473877 atatatgagaacttgacatagactggaatttgcaagacattccaacttttgaactgttttctattcctttttcatgtc 33473954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 17888537 - 17888418
Alignment:
Q  110 agcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgta--taacttgggggaggtttcat 207  Q
    |||| ||| ||||||||||||| | || || ||||||||||| |||  ||  |||||||||||||||||||  |   |  |||||||||||||||||||     
T  17888537 agcacagtaggttgtaggcgtgagattctgtatccgtgttggtggttaaacatctcaccttcacgaagtttggtacaaaataacttgggggaggtttcaa 17888438  T
Q  208 aatcctcatcagtctacctg 227  Q
    ||||||||||||||||||||    
T  17888437 aatcctcatcagtctacctg 17888418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 18467817 - 18467746
Alignment:
Q  109 cagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt 180  Q
    ||||| ||||||||||||| ||||| ||||| |||| |||||||||| ||||||| ||||||||| ||||||    
T  18467817 cagcagagtgggttgtaggagtggggttatgtatccttgttggcggtcgaatctcccaccttcacaaagttt 18467746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 31038064 - 31038007
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttgg 524  Q
    ||||||||||||||| |||||||||| | |||||||||||| |||||| |||||||||    
T  31038064 aataatatatatgagcacctgacatatactggaatctgcaaaacattctaacttttgg 31038007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 27572081 - 27572181
Alignment:
Q  226 tgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatac 325  Q
    |||||||||| || ||||||| |||||||  |||||||||||| | | |||| ||| |||||||| || ||| | || | ||||||||||| ||||||||    
T  27572081 tgatgttggattgtttggctcgaaagagatgttatgcttgttgttgttgcaaagagttgttggttcttggattcgttccttgttgacggttggtccatac 27572180  T
Q  326 a 326  Q
    |    
T  27572181 a 27572181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 32908171 - 32908219
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  32908171 atatatatgagcacctgacatagaccggaatctgcaagtcattccaact 32908219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 7054982 - 7054919
Alignment:
Q  367 gtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgtacccca 430  Q
    |||||||  ||||||||||  |||||||||||||||||| |||||||||| | ||||| |||||    
T  7054982 gtatcacatgattgggttgacatacactttgtgtgaatttattgggttagatctatgtccccca 7054919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 429
Target Start/End: Original strand, 27572221 - 27572285
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgtacccc 429  Q
    ||||||||||  |||||||||  |||||||||||||| ||| | ||||||||||| |||| ||||    
T  27572221 ttgtatcacctcattgggttgacatacactttgtgtggatttactgggttaggttaatgtccccc 27572285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 15 - 423
Target Start/End: Original strand, 24688032 - 24688441
Alignment:
Q  15 ccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcat 114  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||  |||||| ||| |||||||||||||   | | || | ||  ||| | |||||    
T  24688032 ccgttgattgaccatccctcgatctggccttcaattggttttgagttgttttctattgggtttggctagaaattgtcgttaa-gcttactgtcgtagcat 24688130  T
Q  115 agtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcc 212  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||| || |||  || | | ||||||||||  | ||||| |||||    
T  24688131 agtgggttgtaggcgtggggttttgtatccgtgttggtggtagaatctctcaccttcaccaattttggctctatttaacttggggaggttttcaaaatcc 24688230  T
Q  213 tcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgac 312  Q
    |||||||||||||| ||||| ||||  ||||||| |||||||| |||| ||||||||| | |||||||| |||||||| || |||||||| | |||||||    
T  24688231 tcatcagtctacctaatgttcgactctttggctcgaaagagacgttatacttgttgctgttgcaaggagttgttggttcttggatccattccgtgttgac 24688330  T
Q  313 ggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattggg 412  Q
    |||||||||||||||| ||| ||||| |||||||||||        ||||| |||||||||| | ||||||||  |||||||||||||| |||||||| |    
T  24688331 ggtttgtccatacaccgcatattagacattcaccggtgttgtttttatttctttgtatcacctgtttgggttgacatacactttgtgtggattgattgag 24688430  T
Q  413 ttaggtttatg 423  Q
    |||||||||||    
T  24688431 ttaggtttatg 24688441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 141 - 422
Target Start/End: Original strand, 39605710 - 39605987
Alignment:
Q  141 atccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactg 238  Q
    ||||||||||||||||||||||||||||||||||||||||  || | |||||||| ||||||||| || |||||||||||||||||||||||||||||||    
T  39605710 atccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttcggggaggttgcaaaatcctcatcagtctacctgatgttggactg 39605809  T
Q  239 cttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacaccacatgttaga 338  Q
     ||||||| |||||||| |||| ||||||||| |||||||||| |||||||| || ||| |||| | ||||||||||||||||||||||| |||||||||    
T  39605810 tttggctcgaaagagacgttatacttgttgctgtcgcaaggagttgttggttcttggatacattccgtgttgacggtttgtccatacaccgcatgttaga 39605909  T
Q  339 aattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttat 422  Q
     |||||| ||||        ||||| |||||||||||||||||||     |||||| |||||||||||| |||||||| |||||    
T  39605910 cattcactggtg-ttgttttatttctttgtatcacccgattgggt-----tacactatgtgtgaattgactgggttagatttat 39605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 18995647 - 18995234
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| | |||| |||||||||||||||||| |||| |||| | |||| ||| ||||||| |||||||||||||||||   |||||| | |||||||     
T  18995647 ctcagactcattgaatgaccatccctcgatttgaccttcaattggatttgggttgctttctaatggatttggctagaaatggtcatgaa-gctttttgtc 18995549  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    | ||||||| |||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||  |  | ||||||||||| |||||||     
T  18995548 gtagcatagcgggttgtaggcgtggggttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttggcactatataacttgggagaggttta 18995449  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||   |||||  ||   ||||||| || || || |||| ||||||||| ||||||||||| | |||||||||| |||||||| || |||||||| |     
T  18995448 aaaatttgcatcaacct--ttgatgttagattggtttgctcgaaagagacactatgcttgttgttgtcgcaaggagttgttggttcttagatccatttcg 18995351  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    |||||| | || ||||||||| |||| |||||| || ||||| ||        ||||  |||||||| |||||||| |||| |||||||||||||| |||    
T  18995350 tgttgatgattagtccatacatcacacgttagacatccaccgatgttgtttttatttttttgtatcatccgattggattggcatacactttgtgtggatt 18995251  T
Q  406 gattgggttaggtttat 422  Q
    |  ||||||||||||||    
T  18995250 ggctgggttaggtttat 18995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 23846611 - 23846199
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||||| ||||| |||||||||||||| |||| || |||| | ||||| ||  |||||| |||||||||||||||||   | |||| | |||  ||     
T  23846611 ctcagacccattgat-gaccatccctcgatctggc-ttcaattggatttgaattgatttctattggatttggctagaaatggtcgtgaa-gctttccgtc 23846515  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||||||||| |||||||||| ||| | || || ||||||||||| ||||||||||||||||||||| ||||||  || | ||||||||||  | ||||||    
T  23846514 gcagcatag-gggttgtaggtgtgtggttctgaatccgtgttggtggtagaatctctcaccttcactaagtttgactctatataacttggatgcggtttc 23846416  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||||||||| ||||   ||||||||||||| ||||||| |||||||  ||| |||||||||| |||||||||| |||||||| || ||| |||| |     
T  23846415 aaaatcctcatcggtctgtttgatgttggactgtttggctcgaaagagatgttaggcttgttgctgtcgcaaggagttgttggttcttggattcatttcg 23846316  T
Q  306 tgttgacggtttgtccatacaccacatgttag--aaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaa 403  Q
    ||||||||||||||||||||||| | ||||||  | || |||  |||        ||||  |||||||||| | ||||||||  |||||||||||||| |    
T  23846315 tgttgacggtttgtccatacaccgcctgttagacatatccactagtgttgtttttattt--ttgtatcacctgtttgggttgacatacactttgtgtgga 23846218  T
Q  404 ttgattgggttaggtttat 422  Q
    |||||||||||||||||||    
T  23846217 ttgattgggttaggtttat 23846199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 46857422 - 46857839
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||||| ||||| |||||||||||||| |||| || |||| | ||||| ||  |||||| |||||||||||||||||  || |||| | |||  ||     
T  46857422 ctcagacccattgat-gaccatccctcgatctggcttt-aattggatttgaattgatttctattggatttggctagaaatggccgtgaa-gctttccgtc 46857518  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||||||||| |||||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||  || | ||||||||  ||| ||||||    
T  46857519 gcagcatag-gggttgtaggcgtgtggttctgaatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataactt--gggtggtttc 46857615  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | ||||||||||  |||   ||||||||||  | ||||||| |||||||  ||| |||||||||| |||||||||| |||||||| || ||| |||| |     
T  46857616 aaaatcctcatcgatctgtttgatgttggatcgtttggctcgaaagagatgttaggcttgttgctgtcgcaaggagttgttggttcttggattcattccg 46857715  T
Q  306 tgttgacggtttgtccatacaccacatgttag--aaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaa 403  Q
    |||||||||||||| |||||||| | ||||||  | || ||| ||||        ||||  |||||||||| | |||| |||  |||||||||||||| |    
T  46857716 tgttgacggtttgttcatacaccgcctgttagacacatccactggtgttgtttttattt--ttgtatcacctgtttggattgacatacactttgtgtgga 46857813  T
Q  404 ttgattgggttaggtttatgtacccc 429  Q
    |||| |||||||||||||||| ||||    
T  46857814 ttgactgggttaggtttatgtccccc 46857839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 24056110 - 24056525
Alignment:
Q  17 gttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcatag 116  Q
    ||||||||||||||||||||| ||||||| |||| | |||||| | ||||||| |||||||||| ||||||  |  |||| | ||| |||||||||||      
T  24056110 gttgattgaccatccctcgatctggccttcaattggatttgagctgctttctattggatttggccagaaatggctgtgaa-gctttctgttgcagcatca 24056208  T
Q  117 tgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctc 214  Q
      ||||||||| ||| | || || ||  || |||||||| | || ||||||||| ||| |||||  |  | ||||||||||||||||||||| |||||||    
T  24056209 caggttgtaggagtgaggttctgtatttgtattggcggtcggatttctcaccttgacggagtttagcactatataacttgggggaggtttcaaaatcctc 24056308  T
Q  215 atcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacgg 314  Q
    ||| ||||   |||||||||| |  || |||| ||||||||  ||||||||||||| |||||||||| ||||||||||| |||| ||  | |||| | ||    
T  24056309 atcggtctt--tgatgttggattttttagctcgaaagagacgctatgcttgttgctgtcgcaaggagttgttggtttttggatctatctcgtgttaatgg 24056406  T
Q  315 tttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggtt 414  Q
    || ||||||||||| || | |||| |||| || |||        ||||| |||||||||||||||||||| | || |||| |||||||||||| ||||||    
T  24056407 ttggtccatacaccgcacgctagacattcgccagtgttatttttatttctttgtatcacccgattgggtttgcatgcactctgtgtgaattgactgggtt 24056506  T
Q  415 aggtttatgtaccccagtt 433  Q
    |||||||||| ||||||||    
T  24056507 aggtttatgtcccccagtt 24056525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 141 - 302
Target Start/End: Complemental strand, 7194185 - 7194024
Alignment:
Q  141 atccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactg 238  Q
    ||||||||||||||| |||| |||||| ||||||||||||  |  | ||||||||||||||||||||| ||||||||||||| |   |||||||||||||    
T  7194185 atccgtgttggcggtcgaatttctcacattcacgaagtttggcactctataacttgggggaggtttcaaaatcctcatcagtttt--tgatgttggactg 7194088  T
Q  239 cttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccatt 302  Q
     ||||||| |||||||| ||||| |||| ||| | |||||||| |||||||| || ||||||||    
T  7194087 tttggctcgaaagagacgttatgtttgtggctgttgcaaggagttgttggttcttggatccatt 7194024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 467 - 551
Target Start/End: Complemental strand, 23846157 - 23846073
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtca 551  Q
    ||||||||||||||||||||||||||||| |||||||  | ||||||||| ||||||||| ||||||  ||||||||||||||||    
T  23846157 aataatatatatgagtacctgacatagatcggaatctataggacattccatcttttggactgttttctattccttttttatgtca 23846073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 243 - 429
Target Start/End: Original strand, 31135539 - 31135724
Alignment:
Q  243 gctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacaccacatgttagaaatt 342  Q
    |||| |||||||| ||||| |||||||  |||||||||| |||||||| ||  ||||||| ||||||||||||| ||| |||||||||| |||||| |||    
T  31135539 gctcgaaagagacgttatgtttgttgcaatcgcaaggagttgttggttcttgaatccatttcatgttgacggttggtctatacaccacacgttagacatt 31135638  T
Q  343 caccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgtacccc 429  Q
    ||||  ||        ||||| |||||||||| |||||| ||||  |||| |||||||| || || || ||||||||||||| ||||    
T  31135639 caccaatgttattcttatttctttgtatcacctgattggattggcttaca-tttgtgtggatcgactgagttaggtttatgtccccc 31135724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 46857875 - 46857960
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtcat 552  Q
    ||||||||||||||| ||||||||||||| | |||||||| ||||||||| ||||| ||| ||||||  |||||||||||||||||    
T  46857875 aataatatatatgaggacctgacatagatcgaaatctgcaggacattccatcttttagactgttttctattccttttttatgtcat 46857960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 39605589 - 39605668
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaat 87  Q
    |||| |||||||||||||| ||||| |||| ||||||| |||| |||||||| | ||||||| |||||||||||||||||    
T  39605589 ctcaaacccgttgattgacaatcccacgatctggccttcaattggttttgagctgctttctattggatttggctagaaat 39605668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 526
Target Start/End: Original strand, 39606029 - 39606088
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggac 526  Q
    |||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||    
T  39606029 aataatatatatgagttcccgacatagactggaatctgcaagacatttcaacttttggac 39606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 549
Target Start/End: Original strand, 24688491 - 24688572
Alignment:
Q  468 ataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgt 549  Q
    |||||||| ||||| |||||||||| | |||||||| |||||||||||| ||||||||| | ||||  ||||||||||||||    
T  24688491 ataatatacatgagcacctgacataaactggaatctccaagacattccatcttttggactgctttctattccttttttatgt 24688572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 7194285 - 7194214
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaat 87  Q
    |||||||||||||||||||||| ||| ||| |||| | |||| ||| |||| || |||||||||||||||||    
T  7194285 cgttgattgaccatccctcgatctggtcttcaattggatttgcgttactttatattggatttggctagaaat 7194214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 677
Target Start/End: Original strand, 19543545 - 19543581
Alignment:
Q  641 taattaaaatttgttccgttttgatattttaagttta 677  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19543545 taattaaaatttattccgttttgatattttaagttta 19543581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 28086461 - 28086413
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  28086461 atatatatgagcacctgacatagactagaatctgcaagtcattccaact 28086413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 24056554 - 24056608
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttt 521  Q
    |||||||||||||||||||||||||| |  |||||||  |||||||| |||||||    
T  24056554 aataatatatatgagtacctgacataaacgggaatctataagacatttcaacttt 24056608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 532
Target Start/End: Original strand, 29127699 - 29127756
Alignment:
Q  474 tatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgtttt 532  Q
    |||||||| |||||||||||||||||||||| || ||||||||| ||| |||| |||||    
T  29127699 tatatgagaacctgacatagattggaatctgtaa-acattccaattttcggactgtttt 29127756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 586 - 638
Target Start/End: Original strand, 19543476 - 19543528
Alignment:
Q  586 gggagtaaaaaataagctaaattgctatttttgtcctttaactatttaattag 638  Q
    |||||||||| |||| || |||||||||||| |||| ||||||||||| ||||    
T  19543476 gggagtaaaatataaacttaattgctattttcgtcccttaactatttatttag 19543528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 637
Target Start/End: Complemental strand, 24446358 - 24446322
Alignment:
Q  601 gctaaattgctatttttgtcctttaactatttaatta 637  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  24446358 gctaaattgttatttttgtcccttaactatttaatta 24446322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 429
Target Start/End: Complemental strand, 6513089 - 6512673
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| ||||||||||||||||||| || ||||||| |||| | |||||||| ||||||| |||||||||||||||||   | |||| | ||| |||     
T  6513089 ctcagactcgttgattgaccatccctcaatctggccttcaattggatttgagttgctttctattggatttggctagaaatggtcgtgaa-gctttctgtc 6512991  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcat 207  Q
    ||||||||| |||||||||||||||| || || ||||||||||||||| ||||||||||||||||| ||||||     |||||||||||||||||||||     
T  6512990 gcagcatagcgggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacaaagtttagcactataacttgggggaggtttcaa 6512892  T
Q  208 aatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatg 307  Q
    |||||||||||||||   ||||| ||||||| ||||||| ||||||||||||| |||| || | | |||| ||| |||||||| || |||||||| | ||    
T  6512891 aatcctcatcagtctt--tgatgctggactgtttggctcgaaagagacattattcttgctgttgttgcaaagagttgttggttcttggatccatttcgtg 6512794  T
Q  308 ttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattga 407  Q
    ||||||||| ||||||||||| || |||||| |||||||||||        ||||| |||||| || | |||||||||  |||||||||  |||||||||    
T  6512793 ttgacggttggtccatacaccgcaagttagacattcaccggtg-ttgttttatttctttgtattactcaattgggttgacatacactttcagtgaattga 6512695  T
Q  408 ttgggttaggtttatgtacccc 429  Q
     |||||||||||||||| ||||    
T  6512694 ctgggttaggtttatgtccccc 6512673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 3330951 - 3330528
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||||| ||||| |||||||||||||| |||  || |||| |||||||||| |||||||  ||||||||||||||||  || |||| | |||   |     
T  3330951 ctcagaccctttgat-gaccatccctcgatctgga-ttcaattggttttgagttactttctatgggatttggctagaaatggccgtgaa-gctttccatc 3330855  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||  || | ||||||||||  | ||||||    
T  3330854 gcagcatagtgggttgtaggcgtggggttctgtatccgtgttggcggtagaatctctcaccttcacgaagtttcactctatataacttggatgcggtttc 3330755  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgc--tttcgcaaggagctgttggttttttgatccatta 303  Q
    | ||||||| || || | ||||||||||||||| ||||||| |||||||| ||| |||||||||  | |||||||||| |||||||| || ||| ||||     
T  3330754 aaaatcctcttcggtatgcctgatgttggactgtttggctcgaaagagacgttaggcttgttgctatgtcgcaaggagttgttggttcttggattcattc 3330655  T
Q  304 catgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaa 403  Q
    | ||| ||||||||||||||||||| | ||||||| || ||||||||        ||  |  ||||||||| | ||||||||  |||||||||||||| |    
T  3330654 cgtgtcgacggtttgtccatacaccgcctgttagacatccaccggtgttgtttttatccccctgtatcacctgtttgggttgacatacactttgtgtgga 3330555  T
Q  404 ttgattgggttaggtttatgtacccca 430  Q
    |||| |||||||||||||||| |||||    
T  3330554 ttgactgggttaggtttatgtccccca 3330528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 15819706 - 15820124
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||||||||||||||||||||| ||||||| |||| | |||||||| ||||||| ||||||||| |||||||  || || | | ||| |||     
T  15819706 ctcagactcgttgattgaccatccctcgatctggccttcaattggatttgagttgctttctattggatttgggtagaaatggccgtgta-gttttctgtc 15819804  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    ||| || |  ||||||||||| |||| || || ||||||    ||||| ||||||||||||||||||||||||  |  | |||| |||||||||||||||    
T  15819805 gcaacacaacgggttgtaggcatggggttctgtatccgtt---gcggtcgaatctctcaccttcacgaagtttggcactatatatcttgggggaggtttc 15819901  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||||||||||||||   ||||||||||||| ||||||| |||||||| ||||||||||| || |||||||||| |||||||| || |||||||| |     
T  15819902 aaaatcctcatcagtctt--tgatgttggactgtttggctcgaaagagacgttatgcttgtttctatcgcaaggagttgttggttcttggatccatttcg 15819999  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    |||| |||||| ||||||||||| ||  ||||| | |||||||||        ||||| ||||||||||||||||||||||  |||||||||| || |||    
T  15820000 tgttcacggttggtccatacaccgcacattagacaatcaccggtgttgtttttatttctttgtatcacccgattgggttggtttacactttgtatggatt 15820099  T
Q  406 gattgggttaggtttatgtacccca 430  Q
    || | |||||||| ||||| |||||    
T  15820100 gactaggttaggtatatgtccccca 15820124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 109 - 429
Target Start/End: Complemental strand, 6473247 - 6472936
Alignment:
Q  109 cagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcata 208  Q
    |||||||| |||||||||||||||| || || ||||||||||||||| ||||||||||||||||| ||||||     |||||||||||     ||||| |    
T  6473247 cagcatagcgggttgtaggcgtggg-ttctgtatccgtgttggcggtcgaatctctcaccttcacaaagtttggcactataacttggg-----tttcaaa 6473154  T
Q  209 atcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgt 308  Q
    ||||||||||||||   ||||| ||||||| ||||||| ||||||||||||| ||||||| | | |||||||| |||||||| ||||||||||| | |||    
T  6473153 atcctcatcagtctt--tgatgatggactgtttggctcgaaagagacattattcttgttgttgttgcaaggagttgttggttctttgatccatttcgtgt 6473056  T
Q  309 tgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgat 408  Q
    |||||||| ||||||||||| || |||||| ||||| |||||        ||||| |||||||||||||||||||||  |||||||||| |||||||||     
T  6473055 tgacggttggtccatacaccgcaagttagacattcatcggtg-ttgttttatttctttgtatcacccgattgggttgacatacactttgagtgaattgac 6472957  T
Q  409 tgggttaggtttatgtacccc 429  Q
    |||||||||||||||| ||||    
T  6472956 tgggttaggtttatgtccccc 6472936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 118 - 430
Target Start/End: Original strand, 6748241 - 6748549
Alignment:
Q  118 gggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctcatc 217  Q
    |||||||||||||||| || || |||||||||||||||  |||||||||||||||| ||||||     ||||||||||||||||||||| ||||||||||    
T  6748241 gggttgtaggcgtggg-ttctgtatccgtgttggcggtcaaatctctcaccttcacaaagtttggcactataacttgggggaggtttcaaaatcctcatc 6748339  T
Q  218 agtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggttt 317  Q
    |||||   ||||| |||| || || |||| ||||||||||||| ||||||| | | |||||||| |||||||| || |||||||| | |||||||||||     
T  6748340 agtctt--tgatgatggattgtttagctcgaaagagacattattcttgttgttgttgcaaggagttgttggttcttggatccatttcgtgttgacggttg 6748437  T
Q  318 gtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttagg 417  Q
    ||||||||||| || |||| | |||||||||||        ||||| |||||||||||||||||||||  |||||||||| ||||||||| |||||||||    
T  6748438 gtccatacaccgcaagttaaacattcaccggtg-ttgttttatttctttgtatcacccgattgggttgacatacactttgagtgaattgactgggttagg 6748536  T
Q  418 tttatgtacccca 430  Q
    ||||||| |||||    
T  6748537 tttatgtccccca 6748549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 40474889 - 40475297
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcata 115  Q
    |||||||||||||||||||| | |||| || |||| | |||||||| ||||||  |||||||||||||||||   | |||| | ||  ||| ||||||||    
T  40474889 cgttgattgaccatccctcgctctggctttcaattggatttgagttgctttctgttggatttggctagaaatggtcgtgaa-gcttactgtcgcagcata 40474987  T
Q  116 gtgggtt-gtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctc 214  Q
     |||||| |||||||||||  |  | ||||||||||||||| ||||||| ||||||||||||||||     |||||||||||| | |||||| ||||| |    
T  40474988 atgggtttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactataacttgggg-atgtttcaaaatccgc 40475086  T
Q  215 atcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacgg 314  Q
    ||||||||  |||||||||||||| ||| ||| |||||||  || ||||||||| | |||||||||| |||||||| || | || ||| | |||||||||    
T  40475087 atcagtct--ctgatgttggactgtttgtctcgaaagagatgttttgcttgttgttgtcgcaaggagttgttggttcttggttcaattccgtgttgacgg 40475184  T
Q  315 tttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggtt 414  Q
     | ||||||||| || || ||||  || ||||||||        ||||  |||||||||||||||||||||| ||||||  | |||| ||||| ||||||    
T  40475185 atggtccatacatcatatattaggcatccaccggtgttgttttgatttttttgtatcacccgattgggttggcatacac--tctgtggattgactgggtt 40475282  T
Q  415 aggtttatgtacccc 429  Q
    |||||||||| ||||    
T  40475283 aggtttatgtccccc 40475297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 120 - 429
Target Start/End: Complemental strand, 6473758 - 6473453
Alignment:
Q  120 gttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttcataatcctcatcag 219  Q
    |||||||||||||| || || |||||||||||||||  |||||||||||||||  ||||||     ||||||||| ||||||||||| ||||||||||||    
T  6473758 gttgtaggcgtggg-ttctgtatccgtgttggcggtcaaatctctcaccttcaaaaagtttggcactataacttgagggaggtttcaaaatcctcatcag 6473660  T
Q  220 tctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgt 319  Q
    |||   ||||| ||||||  || |||| ||||||||||||| ||||||| | | |||| ||| |||||||| || |||||||| | ||||||||||| ||    
T  6473659 tctt--tgatgatggactctttagctcgaaagagacattattcttgttgttgttgcaaagagttgttggttcttggatccatttcgtgttgacggttggt 6473562  T
Q  320 ccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtt 419  Q
    ||||||||| || |||||| |||||||||||        ||||| |||||||| ||||||||||||  |||||||||| ||||||||  ||| ||| |||    
T  6473561 ccatacaccgcaagttagacattcaccggtg-ttgttttatttctttgtatcatccgattgggttgacatacactttgagtgaattgtctggcttaagtt 6473463  T
Q  420 tatgtacccc 429  Q
    ||||| ||||    
T  6473462 tatgtccccc 6473453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 7 - 429
Target Start/End: Complemental strand, 818454 - 818039
Alignment:
Q  7 actcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgt 106  Q
    |||||| | |||||||||||||||||||||| |||| || |||| | |||||||| ||||||  |||||||||  ||||||   | |||| | ||  |||    
T  818454 actcagtctcgttgattgaccatccctcgatctggctttcaattggatttgagttgctttctgttggatttgg--agaaatggtcgtgaa-gcttactgt 818358  T
Q  107 tgcagcatagtgggtt-gtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagtttctttgtataacttgggggaggtttc 205  Q
     |||||||| |||||| |||||||||||  |  | ||||||||||||||| ||||||| ||||||||||||||||     |||||||||||| | |||||    
T  818357 cgcagcataatgggtttgtaggcgtggggatccgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactataacttgggg-atgtttc 818259  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | ||||| |||||||||  ||||||||||| || ||| ||| ||||||||  | ||||||||||| |||||||||| |||||||| || | || ||| ||    
T  818258 aaaatccgcatcagtct--ctgatgttggattgtttgtctcgaaagagacgctttgcttgttgctgtcgcaaggagttgttggttcttggttcaatttca 818161  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    ||||||||| | |||||||||||  || ||||  || ||||||||        ||||  ||||||| |||||||||||||| ||||||  | |||| |||    
T  818160 tgttgacggatggtccatacaccttatattaggcatccaccggtgttgttttgatttttttgtatcccccgattgggttggcatacac--tctgtggatt 818063  T
Q  406 gattgggttaggtttatgtacccc 429  Q
    || || ||||||||||||| ||||    
T  818062 gactgagttaggtttatgtccccc 818039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 37979030 - 37978779
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcata 115  Q
    |||||||||||||||||||||| ||||||| |||| | |||||| | ||||||| |||||||||||||||||     || ||| ||| |||||||||||     
T  37979030 cgttgattgaccatccctcgatctggccttcaattggatttgagctgctttctattggatttggctagaaatggttgtg-aagctttctgttgcagcatc 37978932  T
Q  116 gtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcct 213  Q
    | |||||||||| ||| | || || ||  ||||||||||| | || |||||||||||||||||||  |  | ||||||||||||||||||||| ||||||    
T  37978931 gcgggttgtaggagtgaggttctgtatttgtgttggcggtcggatttctcaccttcacgaagtttagcactatataacttgggggaggtttcaaaatcct 37978832  T
Q  214 catcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttg 268  Q
    |||||||||   |||||||||| || || |||| ||||||||  |||||||||||    
T  37978831 catcagtct--ttgatgttggattgtttagctcgaaagagacgctatgcttgttg 37978779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 38112099 - 38111863
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| |||||| ||||||||||||||| |||| || |||| | |||||||| |||| || |||||||||||||||||  || |||| | |||||||     
T  38112099 ctcagactcgttgagtgaccatccctcgatctggctttcaattggatttgagttactttatattggatttggctagaaatggccgtgaa-gttttttgtc 38112001  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
     |||||||  |||||||||| ||||| || || ||||||||||||||| ||||||| ||||||||||||||||  |  | ||||||||||||| ||||||    
T  38112000 acagcataacgggttgtaggtgtggggttctgtatccgtgttggcggtcgaatctcccaccttcacgaagtttgacactatataacttggggg-ggtttc 38111902  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctc 246  Q
    | ||||| ||||||  ||  ||||||||||||| |||||||    
T  38111901 aaaatccacatcag--tatttgatgttggactgtttggctc 38111863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 3330493 - 3330410
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtc 550  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||   ||||  |||||||||||||||    
T  3330493 aataatatatatgagtacctgacatagactggaatctgtaagacattccatcttttagactactttctattccttttttatgtc 3330410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 4611816 - 4611681
Alignment:
Q  188 taacttgggggaggtttcataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttg 287  Q
    ||||||||||||||||||| ||||||||||||||||||   | || || || ||  ||| ||||||||||||||||||||| | | |||||||| |||||    
T  4611816 taacttgggggaggtttcaaaatcctcatcagtctacc---tatttga-tgtttaactcgaaagagacattatgcttgttgttgttgcaaggagttgttg 4611721  T
Q  288 gttttttgatccattacatgttgacggtttgtccatacac 327  Q
    ||| || ||| | || | ||||||||| |  |||||||||    
T  4611720 gttcttggattcgttccgtgttgacggatgatccatacac 4611681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 817990 - 817942
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  817990 atatatatgagcacctgacatagactggaatctgcaagacactccaact 817942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 15820163 - 15820211
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  15820163 atatatatgagcacctgacctagactggaatctgcaagacattccaact 15820211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 41696372 - 41696324
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  41696372 atatatataagcacctgacatagattggaatctgcaagacactccaact 41696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 11985746 - 11985676
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaat 87  Q
    ||||||||||||||||||||| | | |||| ||||   |||||||| ||||||| |||||||||||||||||    
T  11985746 cgttgattgaccatccctcgaat-gtccttcaattgaatttgagttgctttctattggatttggctagaaat 11985676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 11985266 - 11985204
Alignment:
Q  118 gggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt 180  Q
    |||||||||| ||||| ||  | || |||||||||| | ||||||||||||||||||||||||    
T  11985266 gggttgtaggtgtggggttccgtattcgtgttggcgatcgaatctctcaccttcacgaagttt 11985204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 517
Target Start/End: Original strand, 40475345 - 40475391
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaa 517  Q
    ||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  40475345 atatatatgagcacctgatatagactggaatctgcaagacactccaa 40475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 38111837 - 38111780
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttat 422  Q
    ||||||||| |||||| ||||   |||||||| |||||||||| ||||||||||||||    
T  38111837 ttgtatcactcgattgagttgacctacactttatgtgaattgactgggttaggtttat 38111780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 118; Significance: 7e-60; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 21810 - 22227
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||||| ||||| |||||||||||||| |||| || |||| | ||||| ||  |||||| |||||||||||||||||  || |||| | |||  ||     
T  21810 ctcagacccattgat-gaccatccctcgatctggc-ttcaattggatttgaattgatttctattggatttggctagaaatggccgtgaa-gctttccgtc 21906  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
     || ||||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||  || | ||||||||||  | ||||||    
T  21907 acaacatag-gggttgtaggcgtggggttctgaatccgtgttggcggtagaatctctcaccttcacgaagtttgactctatataacttggatgcggtttc 22005  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||||||||| ||||  |||||||||||||| ||||||  |||| ||  ||| |||||||| | |||||||||| |||||||| || ||| |||| |     
T  22006 aaaatcctcatcggtctgtctgatgttggactgtttggcttgaaagtgatgttaggcttgttgatgtcgcaaggagttgttggttcttcgattcattccg 22105  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    ||||||||||||||||||||||||||||||||| || ||| |||         ||||  |||||||||| | ||||||||  |||||||||||||| |||    
T  22106 tgttgacggtttgtccatacaccacatgttagacatccactggtattgtttttattt--ttgtatcacctgtttgggttgacatacactttgtgtggatt 22203  T
Q  406 gattgggttaggtttatgtacccc 429  Q
    || ||||||| |||||||| ||||    
T  22204 gactgggttaagtttatgtccccc 22227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 22241 - 22325
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtca 551  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||  ||||||||||||||||    
T  22241 aataatatatatgagtacctgacatagattggaatctgcaggacattccatcttttggactattttctattccttttttatgtca 22325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 121 - 429
Target Start/End: Original strand, 34967647 - 34967954
Alignment:
Q  121 ttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatca 218  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||  || | |||||||| |||   |||||| |||||||||||    
T  34967647 ttgtaggcgtgaggttatgtatccgtgttggcggtagaatctctcaccttcacgaagtttggctctatataacttcggga--gtttcaaaatcctcatca 34967744  T
Q  219 gtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttg 318  Q
    |||||||||||||||||||| ||||||| |||||||| |||| | ||||||| |||  | ||| | |||||| ||||||||||| | ||||||||||||     
T  34967745 gtctacctgatgttggactgtttggctcgaaagagacgttatacctgttgctgtcgagatgagtttttggttctttgatccattccgtgttgacggttt- 34967843  T
Q  319 tccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggt 418  Q
    |||||||||||||||||||| ||||||  |||        ||||| ||||||||| | |||||||||  |||||||||||||| ||||| | ||||||||    
T  34967844 tccatacaccacatgttagacattcactagtgatgtttttatttctttgtatcactctattgggttgacatacactttgtgtggattgactaggttaggt 34967943  T
Q  419 ttatgtacccc 429  Q
     ||||| ||||    
T  34967944 gtatgtccccc 34967954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 22998448 - 22998337
Alignment:
Q  226 tgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatac 325  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||| || |||  ||| | ||||||||||| ||||||||    
T  22998448 tgatgttggactgtttggctcgaaagagacgttatgcttgttgctgtcgcaaggagctgttggttcttggatgaatttcgtgttgacggttggtccatac 22998349  T
Q  326 accacatgttag 337  Q
    ||| ||||||||    
T  22998348 accgcatgttag 22998337  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 13151814 - 13151654
Alignment:
Q  16 cgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgttgcagcata 115  Q
    ||||||||||||||||||| |||||||||| ||||  ||||||||| ||||||  ||||||| |||| ||||   |||| ||| ||   |  |||||| |    
T  13151814 cgttgattgaccatccctcaatttggccttcaattgattttgagttgctttctgttggatttagctataaatggacatg-aagcttacggccgcagcaca 13151716  T
Q  116 gtgggttgtaggc-gtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaa 176  Q
    |||||||||||||  |||| || || ||||||||||| ||| ||||||||||||||||||||    
T  13151715 gtgggttgtaggcattggggttctgtatccgtgttggtggtcgaatctctcaccttcacgaa 13151654  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 226 - 338
Target Start/End: Complemental strand, 7406586 - 7406474
Alignment:
Q  226 tgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatac 325  Q
    ||||||||||||  |||||||||||||||| |||||||||||| | | ||||| || |||||||| ||  || | ||   ||||||||||| ||||||||    
T  7406586 tgatgttggactttttggctcaaaagagacgttatgcttgttgttgttgcaagtagttgttggttcttgaattcgttttgtgttgacggttggtccatac 7406487  T
Q  326 accacatgttaga 338  Q
    ||||||| |||||    
T  7406486 accacattttaga 7406474  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 34967989 - 34968071
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaacttttggaccgttttccgttccttttttatgtca 551  Q
    ||||||||||||||| ||  |||||||| |||||| ||||||  |||||||||||||||| ||||||  ||||||||||||||||    
T  34967989 aataatatatatgagcactagacatagactggaat-tgcaagt-attccaacttttggactgttttctattccttttttatgtca 34968071  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 13151420 - 13151368
Alignment:
Q  467 aataatatatatgagtacctgacatagattggaatctgcaagacattccaact 519  Q
    ||||||||||||||| |||||||| ||| || ||||||||||||||| |||||    
T  13151420 aataatatatatgagcacctgacaaagactgaaatctgcaagacatttcaact 13151368  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 34967531 - 34967610
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaat 87  Q
    |||| ||||||||||| |||||||| |||| |||||||  ||| |||||||| | |||| || ||||||||| |||||||    
T  34967531 ctcaaacccgttgattaaccatcccacgatctggccttcgattggttttgagctgctttatattggatttggttagaaat 34967610  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 521
Target Start/End: Original strand, 35003967 - 35004017
Alignment:
Q  471 atatatatgagtacctgacatagattggaatctgcaagacattccaacttt 521  Q
    ||||||| ||| || ||||||||| ||||||||||||||||||| ||||||    
T  35003967 atatataggagcacatgacatagactggaatctgcaagacattctaacttt 35004017  T

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Target: scaffold0625 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 8 - 422
Target Start/End: Original strand, 1009 - 1422
Alignment:
Q  8 ctcagacccgttgattgaccatccctcgatttggccttgaattagttttgagtttctttctactggatttggctagaaataaccatgaaagatttttgtt 107  Q
    ||||||| | |||| |||||||||||||||||| |||| |||| | |||| ||| ||||||| |||||||||||||||||   |||||| | |||||||     
T  1009 ctcagactcattgaatgaccatccctcgatttgaccttcaattggatttgggttgctttctaatggatttggctagaaatggtcatgaa-gctttttgtc 1107  T
Q  108 gcagcatagtgggttgtaggcgtgggcttatgcatccgtgttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttc 205  Q
    | ||||||| |||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||  |  | ||||||||||| |||||||     
T  1108 gtagcatagcgggttgtaggcgtggggttctgtatccgtgttggcggtcgaatctctcaccttcacgaagtttggcactatataacttgggagaggttta 1207  T
Q  206 ataatcctcatcagtctacctgatgttggactgcttggctcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattaca 305  Q
    | |||   |||||  ||   ||||||| || || || |||| ||||||||| ||||||||||| | |||||||||| |||||||| || |||||||| |     
T  1208 aaaatttgcatcaacct--ttgatgttagattggtttgctcgaaagagacactatgcttgttgttgtcgcaaggagttgttggttcttagatccatttcg 1305  T
Q  306 tgttgacggtttgtccatacaccacatgttagaaattcaccggtgnnnnnnnnatttcattgtatcacccgattgggttggaatacactttgtgtgaatt 405  Q
    |||||| | || ||||||||| |||| |||||| || ||||| ||        ||||  |||||||| |||||||| |||| |||||||||||||| |||    
T  1306 tgttgatgattagtccatacatcacacgttagacatccaccgatgttgtttttatttttttgtatcatccgattggattggcatacactttgtgtggatt 1405  T
Q  406 gattgggttaggtttat 422  Q
    |  ||||||||||||||    
T  1406 ggctgggttaggtttat 1422  T

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Target: scaffold0069 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 147 - 327
Target Start/End: Complemental strand, 19538 - 19356
Alignment:
Q  147 gttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactgcttggc 244  Q
    |||||||||||||||||||||||| |||||||||  || | ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  19538 gttggcggtagaatctctcacctttacgaagtttggctctatataacttgggggaggtttcaaaatcctcatcagtctacctgatgctggactgtttggc 19439  T
Q  245 tcaaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacac 327  Q
    || |||||||| |||| ||| ||||| | |||||||| | |||||| || |||||||| | |||||||||||||||| |||||    
T  19438 tcgaaagagacgttatacttattgctgtagcaaggagttcttggttcttggatccattccgtgttgacggtttgtccttacac 19356  T

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Target: scaffold0069; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 19319 - 19260
Alignment:
Q  365 ttgtatcacccgattgggttggaatacactttgtgtgaattgattgggttaggtttatgt 424  Q
    |||||||| |||||||| |||  |||||||||||||| |||||||| |||||||| ||||    
T  19319 ttgtatcatccgattggattgacatacactttgtgtggattgattgagttaggttaatgt 19260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 93278 - 93080
Alignment:
Q  148 ttggcggtagaatctctcaccttcacgaagttt--ctttgtataacttgggggaggtttcataatcctcatcagtctacctgatgttggactgcttggct 245  Q
    |||||||||||||||||||||||||||||||||  || | ||||| |||||| || ||||| |||| |||||||||||||||||||||||||| ||||||    
T  93278 ttggcggtagaatctctcaccttcacgaagtttggctctatataatttgggg-agatttcaaaatcatcatcagtctacctgatgttggactgtttggct 93180  T
Q  246 caaaagagacattatgcttgttgctttcgcaaggagctgttggttttttgatccattacatgttgacggtttgtccatacaccacatgttagaaattcac 345  Q
    | |||||||| |||| ||||||| | | |||||||| | |||||| || |||||||| | |||| ||| ||||||||||||||  |||||||| ||||||    
T  93179 cgaaagagacgttatacttgttgttattgcaaggagttcttggttcttggatccattccgtgttaacgatttgtccatacaccgtatgttagacattcac 93080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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