View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4417-Insertion-3 (Length: 672)
Name: NF4417-Insertion-3
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417-Insertion-3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 669
Target Start/End: Complemental strand, 2707062 - 2706411
Alignment:
| Q |
7 |
attttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaatagaactaataggtaggtttcacaattgaataatggatggctt |
106 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
2707062 |
attttacacattgcagaagagtaatatataaagcttatgaca--aaaatctcatgaatagaactaataggt----ttcacaattgaaaaatggatggctt |
2706969 |
T |
|
| Q |
107 |
agattaaatacatgagaaataaaataaccaatttcaacacttaacctgagttcctattggttatgttcaaatacattagaaaatatataatatgaagagc |
206 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2706968 |
acaccaaatacatgagaaataaaataaccaatttcaacacttaacctgagttcctattgtttatgttcaaatacattagaaaatatataatatgaagagc |
2706869 |
T |
|
| Q |
207 |
aaaatcgagtcattgaacat--aggctatctcttttcctttgagaaaatatgcactaggacgaatttctttcacattcattcctcaactggaaaaaactg |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2706868 |
aaaatcgagtcattgaacatagaggctatctcttttcctttgagaaaatctgcaccaggacgaatttctttcacattcatccctcaactgg--aaaactg |
2706771 |
T |
|
| Q |
305 |
gtgtgtactctatctatttaacaatattacaacacgtatccgattgataaaaggaggcatatgaaatgaacttgatgagacaaatgttggtatgatcaaa |
404 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2706770 |
gtgtgtactctatctatttcacaatattacaacacgtatccgattggtaaaaggaggc--atgaaatgaacttgatgagacaaatgttggtatgatcaaa |
2706673 |
T |
|
| Q |
405 |
tgaacnnnnnnnnnnntgatgcaacgtttaaaagggggcctcttagtaaaacatactaaagaaatgctgaaactccaatttgcagagaaaattacttcaa |
504 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
2706672 |
tgaacaaaaaaaaaa---atgcaaggtttaaaagggagcctcttagtaaaacatactaaagaaatgccgaaactccagtttgcagagaaaattacttaaa |
2706576 |
T |
|
| Q |
505 |
aaaataattttgtcatgtgagtttgatgataatagagttatgagccaacctaacaaacaaaccattagaagagcctgcaatatatttccctaaccatctc |
604 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2706575 |
aaaataattttgtcatgtgaatttgatgatagtagaattatgagcaaacctaacaaacaaaccattagaagagcctgaaaaatatttccctaaccatctc |
2706476 |
T |
|
| Q |
605 |
tcttccaccaacgctatagttcccatccttccctttatttctttctcagtatttttccctccccc |
669 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2706475 |
tcttccaccaacgctatagttcccgtccttccctttatttctttctcaatattttttcctccccc |
2706411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 556 - 672
Target Start/End: Original strand, 14764221 - 14764337
Alignment:
| Q |
556 |
aacaaacaaaccattagaagagcctgcaatatatttccctaaccatctctcttccaccaacgctatagttcccatccttccctttatttctttctcagta |
655 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
14764221 |
aacaaacaaaccattagaagggcctgcaaaatatttccctaaccatctctcttccaccatcgttatagttcccatccttccctttatttctttctcaata |
14764320 |
T |
|
| Q |
656 |
tttttccctcccccctc |
672 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14764321 |
tttttccctcccccctc |
14764337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 13772213 - 13772282
Alignment:
| Q |
7 |
attttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaatagaactaataggt |
77 |
Q |
| |
|
||||||| |||| |||||| ||||||||| |||||||||| |||||| |||| |||||||||| ||||||| |
|
|
| T |
13772213 |
attttacgcattgtagaagagtaatatat-aagcttatgacataaaactctcgtgaatagaaccaataggt |
13772282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 22216550 - 22216600
Alignment:
| Q |
7 |
attttacacattctagaagggtaatatataaagcttatgagataaaaatct |
57 |
Q |
| |
|
|||||||||||| |||||| ||| | |||||||||||||| |||||||||| |
|
|
| T |
22216550 |
attttacacattgtagaagagtactctataaagcttatgacataaaaatct |
22216600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 9041567 - 9041471
Alignment:
| Q |
7 |
attttacacattctagaagggtaatatataaagcttatgagataaaaatctcatgaatagaactaataggtaggtttcacaattgaataatggatggctt |
106 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9041567 |
attttacacattgtagaagagtaatatataaagcttatgacataaaaatctcatgaatagaactaat----aggtttcacaattgaaaaatggatggctt |
9041472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University