View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4417-Insertion-4 (Length: 482)

Name: NF4417-Insertion-4
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4417-Insertion-4
NF4417-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-482)||(20422521-20422996)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 20422996 - 20422521
Alignment:
Q  8 aaaatttgatatgcctaataagaatgatgtcactattgctaaggcaaaatttcat--ttgttttgtcaattaaagttgaaatgtttgaagactgttctac 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||| ||||||    
T  20422996 aaaatttgacatgcctaataagaatgatgtcactattgctaaggcaaaatttcatattttttttttcaattaaagttgaaatgtttgaagactattctac 20422897  T
Q  106 aatttcagcaagatctgagtgtgtcaatctgaattatgagtcactgtggtttgttagnnnnnnnnntagttttaagagaaaaatttaacatacaaaatga 205  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||         |||||| |||||| ||||||||||||||||||||    
T  20422896 aatttctgcaagatctgagtgtgtcaatctgaattatgagtcactctgttttgttagaaaaaaaa-tagtttcaagagataaatttaacatacaaaatga 20422798  T
Q  206 agagaaaaattgatgagataggaaataaagtaattagattcagttacccttcnnnnnnnncttttcaaaggagactttgaagaaggggtgttttgttctt 305  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||        |||||||||||||| |||||||||||||||||||||||||    
T  20422797 agagaaaaattgatgagacaggaaataaagtaattaggttcagttacccttcgtttttttcttttcaaaggagagtttgaagaaggggtgttttgttctt 20422698  T
Q  306 cccctttgaatgagatttggagactttcttcttcattctctgattctggaatagttgatatgttggaatctgcattcttcatttcatccaagatttgatc 405  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20422697 cccctttgaatgagatttggagactttcttcttcattctttgattcttgaatagttgatatgttggaatctgcattcttcatttcatccaagatttgatc 20422598  T
Q  406 gtgaaactctagactctgagtcattatggacttatcaaatgacttataaagagattgaagttaggttatttatttgt 482  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20422597 gtgaaactctagactttgagtcattgtgggcttatcaaatgacttataaagagattgaagttaggttatttatttgt 20422521  T

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