View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4417-Insertion-6 (Length: 307)

Name: NF4417-Insertion-6
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4417-Insertion-6
NF4417-Insertion-6
[»] chr1 (10 HSPs)
chr1 (8-275)||(28239426-28239693)
chr1 (11-94)||(28231736-28231819)
chr1 (174-260)||(28231896-28231983)
chr1 (8-77)||(6326514-6326583)
chr1 (11-52)||(24621575-24621616)
chr1 (14-52)||(23787262-23787300)
chr1 (13-80)||(14508590-14508657)
chr1 (175-218)||(47569524-47569567)
chr1 (11-52)||(47569363-47569404)
chr1 (8-52)||(28326558-28326602)
[»] chr5 (2 HSPs)
chr5 (13-52)||(1718125-1718164)
chr5 (7-44)||(28804227-28804264)
[»] chr2 (1 HSPs)
chr2 (9-40)||(16375422-16375453)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 28239426 - 28239693
Alignment:
Q  8 ctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239426 ctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaaaaagcaaccttat 28239525  T
Q  108 gaataagattgnnnnnnnggtcaaaagactgctactttccgtaccttacgagtttaacggtatttcttatgattgaactacaacaaactatttatagtgg 207  Q
    |||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239526 gaataagattgaaaaaaaggtcaaaaaactgctactttccgtaccttacgagtttaacggtatttcttatgattgaactacaacaaactatttatagtgg 28239625  T
Q  208 gattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaataa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239626 gattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatgatggtgaaacaataa 28239693  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 28231736 - 28231819
Alignment:
Q  11 tgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaaggccaaggtggatcaa 94  Q
    |||||||||||||||||||||||||||| |||||| |||| | |||||||  |||||||||||||||| |||||||||||||||    
T  28231736 tgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaaagccaaggtggatcaa 28231819  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 28231896 - 28231983
Alignment:
Q  174 ttatgattgaactacaa-caaactatttatagtgggattgtttggtaaaacatcgaaagacaagttggttgtgttccagttgatgatg 260  Q
    |||||||||||| |||| ||||||||||| ||||||  |||||||| ||||||| ||||||||||||||||  ||| |||||||||||    
T  28231896 ttatgattgaacaacaaacaaactatttaaagtgggcgtgtttggtgaaacatccaaagacaagttggttgcattctagttgatgatg 28231983  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6326583 - 6326514
Alignment:
Q  8 ctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaa 77  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||| |||||||  ||||||| |||||||    
T  6326583 ctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcactcagttgctgatggaatatacaa 6326514  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 24621616 - 24621575
Alignment:
Q  11 tgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 52  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  24621616 tgatgataaaagctggtgtcaaacctaatgttgcttgttatc 24621575  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 23787262 - 23787300
Alignment:
Q  14 tgataaaaggtggtgtcaaacctaatgttgcttgttatc 52  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  23787262 tgataaaagctggtgtcaaacctaatgttgcttgttatc 23787300  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 14508657 - 14508590
Alignment:
Q  13 atgataaaaggtggtgtcaaacctaatgttgcttgttatcgctcagtttatgatggactatacaaagg 80  Q
    ||||||||||||||||||||||||| ||||||| ||| || ||| ||   ||||| ||||||||||||    
T  14508657 atgataaaaggtggtgtcaaacctattgttgctagttttcactcggtgattgatgaactatacaaagg 14508590  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 47569524 - 47569567
Alignment:
Q  175 tatgattgaactacaacaaactatttatagtgggattgtttggt 218  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||    
T  47569524 tatgattgaacaacaacaaactatttaaagtgggcttgtttggt 47569567  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 47569363 - 47569404
Alignment:
Q  11 tgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 52  Q
    |||||||||||||| ||||||||||||||| |||| ||||||    
T  47569363 tgatgataaaaggtagtgtcaaacctaatgctgctagttatc 47569404  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 28326558 - 28326602
Alignment:
Q  8 ctgtgatgataaaaggtggtgtcaaacctaatgttgcttgttatc 52  Q
    |||| ||||||||||||||| ||| ||||||||||||| ||||||    
T  28326558 ctgtcatgataaaaggtggtctcagacctaatgttgctagttatc 28326602  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 1718125 - 1718164
Alignment:
Q  13 atgataaaaggtggtgtcaaacctaatgttgcttgttatc 52  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  1718125 atgataaaaggtggtgtcaaacctattgttgctggttatc 1718164  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28804264 - 28804227
Alignment:
Q  7 actgtgatgataaaaggtggtgtcaaacctaatgttgc 44  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  28804264 actgttatgataaaaagtggtgtcaaacctaatgttgc 28804227  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 16375422 - 16375453
Alignment:
Q  9 tgtgatgataaaaggtggtgtcaaacctaatg 40  Q
    ||||||||||||||||||||||||||||||||    
T  16375422 tgtgatgataaaaggtggtgtcaaacctaatg 16375453  T

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