View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4417_high_9 (Length: 259)
Name: NF4417_high_9
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 50234694 - 50234452
Alignment:
| Q |
1 |
caaacaattaatcggcgaagagaaagacaacataagtgccaagcacaaaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttcttt |
100 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234694 |
caaacaattaatggccgaagagaaagacaacataagtgccaagcacagaacagaggtgtttctcaaacccattgttcttttttcttgctttctcttcttt |
50234595 |
T |
|
| Q |
101 |
gatcagggacaatcagaaaccaagttggtggtatatgaaattgttgagtttgtaggttttgatgtgtgtaggtatatatatacgtttggtttataaatgt |
200 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50234594 |
gatcagggacaatccgaaaccaagttggtggtatatgaaattgttgagtttgtaggttttgatgtgtgtaggtatatatatgcgtttggtttataaatgt |
50234495 |
T |
|
| Q |
201 |
gtggtgtgtgggattagtggtcaattttaattatagtaaagtc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234494 |
gtggtgtgtgggattagtggtcaattttaattatagtaaagtc |
50234452 |
T |
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