View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4417_low_10 (Length: 274)
Name: NF4417_low_10
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 4390571 - 4390326
Alignment:
| Q |
13 |
tgagatggatgaagaggaggaggacgggtgtgagtgtgtcggagtcggcgaaaaaagaaaaggaaatgattttgatgaagaaagttttgattttgaagac |
112 |
Q |
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| T |
4390571 |
tgagatggatgaagaggaggaggaggggtgtgagtgtgttggggtcggcaaaaaaagaaaaggaaatgatgttgatgaagaaagttttgattttgaagat |
4390472 |
T |
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| Q |
113 |
attttcaagagaatgagagatgggtcaatagctagtggtgataatattcagcaggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaatac |
212 |
Q |
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| T |
4390471 |
attttcaagagaatgagagatgggtcattagctagtggtgataatattcaggaggaagcgtgtcgagcgattgcgaggtttttctacaacaatgcaatac |
4390372 |
T |
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| Q |
213 |
cgatgaaggctgtgaagagtaaggagtttgttagaatgtgtgatat |
258 |
Q |
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| T |
4390371 |
cgatgaaggcggtgaagagtaaggagtttgttagaatgtgtgatat |
4390326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 4385432 - 4385217
Alignment:
| Q |
45 |
agtgtgtcggagtcggcgaaaaaagaaaaggaaatgattttgatgaagaaagttttgattttgaagacattttcaagagaatgagagatgggtcaatagc |
144 |
Q |
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| T |
4385432 |
agtgtgtcggagttggcaaaaaaagaaaagcaaataatgttggtggtgaaagttttgattttgaagatattttcaagaaaaaaagaggtgggtcaatagc |
4385333 |
T |
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| Q |
145 |
tagtggtgataata------ttcagcaggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccgatgaaggctgtgaagagtaaggag |
238 |
Q |
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| T |
4385332 |
tagtggtgataataataatattgaggaggaagcgtgtcgagcgattgcgaggtttttctacaacaatgcaataccgatgaaggcggtgaagagtatggag |
4385233 |
T |
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| Q |
239 |
tttgttagaatgtgtg |
254 |
Q |
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| T |
4385232 |
tttgttcaaatgtgtg |
4385217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 4377892 - 4377643
Alignment:
| Q |
12 |
atgagatggatgaagaggaggaggacgggtgtgagtgtgtcggagtcggcgaaaaaagaaaaggaaatgattttgatgaagaaagttttgattttgaaga |
111 |
Q |
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| T |
4377892 |
atgaggtggatgaggatgagggggaggggagaaagtgtgtcgaagttggcaaaaaaagaaaaggaaataatgttggtggtgaaagttttgattttgaaga |
4377793 |
T |
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| Q |
112 |
cattttcaagagaatgagagatgggtcaatagctagtggtgataatat---tcagcaggaagcgtgtagagcgattgcgaggtttttctacaacaatgca |
208 |
Q |
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| T |
4377792 |
tattttcaagaaaaaaacagatggcgcattagctagtggtgataataaaaatgaggaggaagcgtgtcgagcgattgcgaggtttttctacaacaattta |
4377693 |
T |
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| Q |
209 |
ataccgatgaaggctgtgaagagtaaggagtttgttagaatgtgtgatat |
258 |
Q |
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| T |
4377692 |
ataccaatgaaggcggtgaagagtatggagtttgttcgaatgtgtgatat |
4377643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 4370577 - 4370528
Alignment:
| Q |
165 |
aggaagcgtgtagagcgattgcgaggtttttctacaacaatgcaataccg |
214 |
Q |
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| T |
4370577 |
aggaagcatgtcaagcgattgcaaggtttttctacaacaatgccataccg |
4370528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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