View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4417_low_2 (Length: 909)
Name: NF4417_low_2
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 836; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 18 - 901
Target Start/End: Original strand, 38179828 - 38180711
Alignment:
| Q |
18 |
cacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179828 |
cacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaa |
38179927 |
T |
|
| Q |
118 |
gtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgatt |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38179928 |
gtaattatcttctgattcaacaccgacaacaccaccactagacgaagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggtccgatt |
38180027 |
T |
|
| Q |
218 |
ggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatcta |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
38180028 |
ggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatata |
38180127 |
T |
|
| Q |
318 |
gaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38180128 |
gaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaa |
38180227 |
T |
|
| Q |
418 |
tcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38180228 |
tcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgca |
38180327 |
T |
|
| Q |
518 |
gcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180328 |
gcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgac |
38180427 |
T |
|
| Q |
618 |
cttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180428 |
cttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattt |
38180527 |
T |
|
| Q |
718 |
tgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaa |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180528 |
tgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaa |
38180627 |
T |
|
| Q |
818 |
gtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
901 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180628 |
gtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 18 - 901
Target Start/End: Original strand, 38184497 - 38185380
Alignment:
| Q |
18 |
cacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184497 |
cacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaa |
38184596 |
T |
|
| Q |
118 |
gtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgatt |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184597 |
gtaattatcttctgattcaacatcgacaacaccaccaccagacgaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgatt |
38184696 |
T |
|
| Q |
218 |
ggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatcta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38184697 |
ggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatcta |
38184796 |
T |
|
| Q |
318 |
gaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38184797 |
gaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaa |
38184896 |
T |
|
| Q |
418 |
tcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184897 |
tcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgca |
38184996 |
T |
|
| Q |
518 |
gcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184997 |
gcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgac |
38185096 |
T |
|
| Q |
618 |
cttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattt |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || |||||||||||||||||||| || |
|
|
| T |
38185097 |
cttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatt |
38185196 |
T |
|
| Q |
718 |
tgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaa |
817 |
Q |
| |
|
| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
38185197 |
tttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaa |
38185296 |
T |
|
| Q |
818 |
gtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
901 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185297 |
gtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 901
Target Start/End: Original strand, 38170014 - 38170897
Alignment:
| Q |
18 |
cacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
38170014 |
cacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacataaacaacagacttttcatcctttgaatccaaccattgaat |
38170113 |
T |
|
| Q |
118 |
gtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgatt |
217 |
Q |
| |
|
||||| ||| | ||| ||||| | |||||| |||||||| || || |||| ||||||| || || ||||||||||| |||||||||| |||||||| |
|
|
| T |
38170114 |
gtaatcatcctttgagtcaacacggacaacgtcaccaccaaacgaattatccgtaggatccttgccatccaagaaagcagatggaatcaacggtccgatg |
38170213 |
T |
|
| Q |
218 |
ggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcat-ct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| ||||||||| | |||||| ||||||||| | |
|
|
| T |
38170214 |
ggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgatttcttcattca |
38170313 |
T |
|
| Q |
317 |
agaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgaca |
416 |
Q |
| |
|
| |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
38170314 |
acaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgaca |
38170412 |
T |
|
| Q |
417 |
atcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgc |
516 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
38170413 |
atcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgc |
38170512 |
T |
|
| Q |
517 |
agcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacga |
616 |
Q |
| |
|
||||||||||| || || | ||||||||||||||||||| |||||||||| | |||| | || |||| | |||| |||||||||||||||| || |
|
|
| T |
38170513 |
tgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatga |
38170612 |
T |
|
| Q |
617 |
ccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaatt |
716 |
Q |
| |
|
||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | |||||||| || | ||| |
|
|
| T |
38170613 |
ttttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatt |
38170712 |
T |
|
| Q |
717 |
ttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaa |
816 |
Q |
| |
|
|| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
38170713 |
tttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaa |
38170812 |
T |
|
| Q |
817 |
agtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
901 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
38170813 |
agtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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