View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4417_low_3 (Length: 740)
Name: NF4417_low_3
Description: NF4417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4417_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 448 - 722
Target Start/End: Complemental strand, 7495588 - 7495314
Alignment:
| Q |
448 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaacgaaacattatatttccttcgcagaagtttataatctaagtactaaat |
547 |
Q |
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| T |
7495588 |
aacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaatgaaacattatatttccttcgcggaagtttataatctaagtactaaat |
7495489 |
T |
|
| Q |
548 |
tatgtacccctactcaacatcctcatcctttaactatcatcatgcgtcaacgtccttctaaatacaacactcttgttaatggtgtttatcattggattac |
647 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7495488 |
tatggacccctactcaacatcctcatcctttaactatcatcacgcgtcaacgtccttctaaatacaacactcttgttaatggtgtttatcattggattac |
7495389 |
T |
|
| Q |
648 |
agagaatacatattacaatcccaatgattatgctgcaaatattctatgttttgactttcacagcaacaagtttca |
722 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7495388 |
agagaatacatattactatcccaatgattatgctgcaaatattctatgttttgactttcacagcaacaagtttca |
7495314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 140 - 471
Target Start/End: Complemental strand, 7488416 - 7488081
Alignment:
| Q |
140 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
239 |
Q |
| |
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|||||||||||||| | || ||||||||| ||| || |||||| |||||||||||| |||||||||||| ||| ||||| |||||||||| || |||||| |
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| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
|
| Q |
240 |
ccaacaacgtctttcatcct---ataagaatagaatcctatggtcgttgcaacggtgttttctgtcttaaacgtttgtgtcggtttcctaaaagttgtct |
336 |
Q |
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|||||| | | || || |||||||| ||||| |||||| ||||||| || ||||||||||| || |||||||| |||||| ||| |||||||| |
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| T |
7488316 |
ccaacagcaattgtcgcacttttataagaatggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtct |
7488217 |
T |
|
| Q |
337 |
cgatgagttaattatgtggaacccaacc-ctagagaggtccaccgtgttcctccgagtctctgccttgacaacgactcacgcatgtatggtttcggtgct |
435 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7488216 |
tgatgagttaattatgtggaaccctacaactagagaggtccaccgtgttcctccgagtctctgccttgataacgactcatgcatgtatggtttcggtgcc |
7488117 |
T |
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| Q |
436 |
gatgatccaaacaacatcaacttcaaagctgtgaaa |
471 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| |
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| T |
7488116 |
gatgatcccaacaacatcaacttcaaagttgtgaaa |
7488081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 7499834 - 7499702
Alignment:
| Q |
8 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaat |
107 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
7499834 |
attattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatat-gcactatctgttaatacatggctggttttagaat |
7499736 |
T |
|
| Q |
108 |
gatgtctcagttttttatgtttcttgatcatgaa |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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| T |
7499735 |
gatgtctcagttttttatgtttctagatcatgaa |
7499702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 329 - 706
Target Start/End: Complemental strand, 7475354 - 7474982
Alignment:
| Q |
329 |
agttgtctcgatgagttaattatgtggaacccaacc-ctagagaggtccaccgtgttcctccgagtctctgccttgacaacgactcacgcatgtatggtt |
427 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||||||||| ||| |||| || | | |||||| || | | | ||| |||||||||| |
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| T |
7475354 |
agttgtctagatgagttaattatttggaacccaacaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggtt |
7475255 |
T |
|
| Q |
428 |
tcggtgctgatgatccaaacaacatcaacttcaaagctgtgaaatttcatatcaattattgctctgtgacaacgaaacattatatttccttcgcagaagt |
527 |
Q |
| |
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| ||||| ||||||||||||| ||| | ||||||| ||||||| | ||| |||| |||| | || || ||||||||||||||| | || ||||| |
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| T |
7475254 |
ttggtgcagatgatccaaacatcattgatttcaaagttgtgaaactccatgtcaagtattac-----gagaa-gaaacattatatttcatgggcggaagt |
7475161 |
T |
|
| Q |
528 |
ttataatctaagtactaaattatgtacccctactcaacatcctcatcctttaactatcatcatgcgtcaacgtccttctaaatacaacactcttgttaat |
627 |
Q |
| |
|
||||| |||| ||||||||| ||| || ||||| | |||| ||| |||||| |||||||||| || || ||| || ||||| |||| ||||||||| |
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| T |
7475160 |
ttatagtctaggtactaaatcatggactcctaccctacatgctcctccttttactatcatcacacgaaaaattccctccaaatataacaatcttgttaac |
7475061 |
T |
|
| Q |
628 |
ggtgtttatcattggattacagagaatacatattacaatcccaatgattatgctgcaaatattctatgttttgactttc |
706 |
Q |
| |
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|| ||||||||||||||||| | ||| ||| | | ||| ||||||| ||| ||||||||| ||||| ||| |||||| |
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| T |
7475060 |
ggcatttatcattggattacaaacaatgcattcttctatcgcaatgatgatgttgcaaatatcctatgctttaactttc |
7474982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 7475532 - 7475400
Alignment:
| Q |
184 |
accctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaacgtctttcatcctataagaatagaatcctatggtcgt |
283 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||| ||||||||| || |||||||| |||| | ||| ||||||| ||| ||||| |||||| || |
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| T |
7475532 |
accctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacctataacaattgaatcatatggtagt |
7475433 |
T |
|
| Q |
284 |
tgcaacggtgttttctgtcttaaacgtttgtgt |
316 |
Q |
| |
|
| ||| |||||||||||||| ||| |||||||| |
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|
| T |
7475432 |
ttcaatggtgttttctgtctcaaaggtttgtgt |
7475400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 523 - 648
Target Start/End: Original strand, 6944002 - 6944130
Alignment:
| Q |
523 |
gaagtttataatctaagtactaaattatgtacccctactcaacatcctcatcct---ttaactatcatcatgcgtcaacgtccttctaaatacaacactc |
619 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| |||||||| | |||||||| |||| || |||||||||| |||||| |||| | ||||| ||||||| |
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| T |
6944002 |
gaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctccttttactatcatcacacgtcaatgtcccttcaaatataacactc |
6944101 |
T |
|
| Q |
620 |
ttgttaatggtgtttatcattggattaca |
648 |
Q |
| |
|
||||||| || |||||||||||||||||| |
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|
| T |
6944102 |
ttgttaacggcgtttatcattggattaca |
6944130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
188 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
246 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||| |
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|
| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 8139028 - 8139134
Alignment:
| Q |
8 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgttt-atatatggcactatctgttaatacatggctggctttagaa |
106 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| | ||||||||||| || |||| ||||||| ||||||||||||||| |||| ||| |
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|
| T |
8139028 |
attattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgttttatgtatg-cactatcagttaatacatggctgactttggaa |
8139119 |
T |
|
| Q |
107 |
tgatgtctcagtttt |
121 |
Q |
| |
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| ||||||||||||| |
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| T |
8139120 |
ttatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 650
Target Start/End: Original strand, 7873375 - 7873426
Alignment:
| Q |
599 |
gtccttctaaatacaacactcttgttaatggtgtttatcattggattacaga |
650 |
Q |
| |
|
||||||||| ||| |||||||||||||| || |||||||||||||||||||| |
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|
| T |
7873375 |
gtccttctagatataacactcttgttaacggcgtttatcattggattacaga |
7873426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
108 |
gatgtctcagttttttatgtttcttgatcat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 649
Target Start/End: Complemental strand, 13877850 - 13877808
Alignment:
| Q |
607 |
aaatacaacactcttgttaatggtgtttatcattggattacag |
649 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
13877850 |
aaatacaacattcttgttaatggcatttatcattggattacag |
13877808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 648
Target Start/End: Complemental strand, 31103731 - 31103692
Alignment:
| Q |
609 |
atacaacactcttgttaatggtgtttatcattggattaca |
648 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
31103731 |
atacaacactcttgttaacggtgtttattattggattaca |
31103692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 609 - 647
Target Start/End: Complemental strand, 31097177 - 31097139
Alignment:
| Q |
609 |
atacaacactcttgttaatggtgtttatcattggattac |
647 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
31097177 |
atacaacactcttgctaacggtgtttatcattggattac |
31097139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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